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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
107
ChIP-seq
28
DNase-seq
15
total RNA-seq
6
WGBS
3
ATAC-seq
1
small RNA-seq
Assay category
107
DNA binding
31
DNA accessibility
16
Transcription
6
DNA methylation
Target of assay
95
histone
95
histone modification
57
broad histone mark
38
narrow histone mark
12
transcription factor
10
RNA binding protein
Date released
47
April, 2019
40
May, 2024
31
June, 2019
18
July, 2019
12
May, 2019
7
October, 2019
3
May, 2021
2
March, 2020
Available data
160
bigWig
138
bed narrowPeak
135
bam
113
tsv
89
bigBed narrowPeak
28
bed bed3+
28
bed broadPeak
28
bigBed broadPeak
8
bed bedMethyl
8
bigBed bedMethyl
3
bedpe bed3+
3
hic
Organism
160
Homo sapiens
Biosample type
151
tissue
8
primary cell
1
in vitro differentiated cells
Organ
623
pancreas
622
liver
570
connective tissue
425
adipose tissue
301
epithelium
224
heart
222
brain
vasculature
150
blood vessel
131
kidney
91
limb
85
artery
68
musculature of body
58
bone element
55
blood
55
bodily fluid
31
nerve
29
embryo
18
ureter
16
spleen
15
vein
6
eye
1
pericardium
1
pituitary gland
Project
160
AMP
Genome assembly (visualization)
159
GRCh38
111
hg19
Lab
120
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
Audit category:
4
inconsistent ontology term
lab.title!
Anna Gloyn, Oxford
organ_slims!
vasculature
BIOSAMPLE
ASSAY
160 results
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Clear Filters
ChIP-seq
DNase-seq
total RNA-seq
WGBS
ATAC-seq
small RNA-seq
tissue
left cardiac atrium
40
1
heart left ventricle
29
3
3
2
2
heart
12
18
4
1
1
heart right ventricle
11
1
1
2
right atrium auricular region
7
2
2
1
+ See 3 more…
primary cell
cardiac fibroblast
3
3
cardiac atrium fibroblast
1
cardiac ventricle fibroblast
1
in vitro differentiated cells
cardiac fibroblast
1
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