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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
275
ChIP-seq
241
total RNA-seq
198
ATAC-seq
175
single cell RNA-seq
41
WGBS
29
DNase-seq
29
snATAC-seq
16
pCHi-C
9
Hi-C
9
RRBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
418
Transcription
275
DNA binding
257
DNA accessibility
51
DNA methylation
9
3D chromatin structure
Target of assay
234
histone
234
histone modification
121
broad histone mark
113
narrow histone mark
34
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
206
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
73
September, 2018
59
August, 2017
59
September, 2020
53
June, 2019
February, 2021
48
July, 2018
43
April, 2018
33
October, 2019
29
July, 2019
9
November, 2017
8
January, 2021
7
August, 2020
6
November, 2020
5
May, 2019
5
September, 2017
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
600
bigWig
594
bam
364
fastq
288
bed narrowPeak
258
tsv
153
zippedFastqFolder
107
bigBed narrowPeak
96
tagAlign
47
bed broadPeak
47
bigBed broadPeak
30
bed bed3+
9
bed bedMethyl
9
bigBed bedMethyl
6
hic
4
bedpe bed3+
3
cool
3
hdf5
2
csv
1
tar
Organism
1026
Homo sapiens
Biosample type
1872
tissue
1026
primary cell
353
in vitro differentiated cells
165
cell line
8
stem cell
Organ
400
epithelium
340
pancreas
37
vasculature
36
connective tissue
36
kidney
31
blood vessel
22
vein
21
brain
liver
14
musculature of body
13
heart
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
542
AMP
279
HPAP
204
T1D
1
ITG
Genome assembly (visualization)
612
hg19
523
GRCh38
Lab
507
AMP-T2D consortium
279
Klaus Kaestner, Upenn
239
Kyle Gaulton, UCSD
1
ITG
Audit category:
53
inconsistent ontology term
4
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
lab.title!
Anna Gloyn, Oxford
month_released!
February, 2021
organ_slims!
liver
BIOSAMPLE
ASSAY
1026 results
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ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
WGBS
DNase-seq
snATAC-seq
pCHi-C
Hi-C
RRBS
small RNA-seq
DNAme array
FAIRE-seq
primary cell
monocyte
85
54
15
1
1
pancreatic alpha cell
13
52
35
12
25
1
Langerhans cell
73
21
pancreatic beta cell
13
21
23
12
16
1
CD8-positive, alpha-beta T cell
33
4
2
1
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