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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
187
DNase-seq
46
ChIP-seq
8
ATAC-seq
5
total RNA-seq
3
single cell RNA-seq
2
RNA microarray
Assay category
195
DNA accessibility
46
DNA binding
8
Transcription
Target of assay
31
histone
31
histone modification
18
broad histone mark
13
narrow histone mark
11
control
4
RNA binding protein
4
transcription factor
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
1
March, 2023
Available data
238
bam
229
bigWig
222
bed narrowPeak
216
bigBed narrowPeak
191
bed broadPeak
187
bed bed3+
187
bigBed broadPeak
17
fastq
14
tagAlign
9
tsv
Organism
251
Homo sapiens
Biosample type
189
tissue
60
primary cell
2
in vitro differentiated cells
Organ
84
kidney
46
brain
43
musculature of body
35
heart
32
limb
26
epithelium
19
connective tissue
18
ureter
9
pancreas
7
eye
7
liver
7
vasculature
5
blood vessel
2
adipose tissue
2
artery
1
spleen
Project
251
AMP
Genome assembly (visualization)
229
GRCh38
205
hg19
Lab
250
AMP-T2D consortium
1
Stephen Parker, UMich
Audit category:
28
inconsistent ontology term
4
audit script error
Audit category:
4
missing controlled_by
lab.title!
Anna Gloyn, Oxford
BIOSAMPLE
ASSAY
251 results
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Clear Filters
DNase-seq
ChIP-seq
ATAC-seq
total RNA-seq
single cell RNA-seq
RNA microarray
tissue
brain
12
15
heart
18
muscle of arm
17
kidney
13
1
muscle of leg
13
+ See 38 more…
primary cell
cardiac fibroblast
3
5
skeletal muscle satellite cell
8
mesenchymal stem cell
7
hepatocyte
1
5
cardiac muscle cell
1
3
+ See 17 more…
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
See all biosamples
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