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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
183
DNase-seq
41
ChIP-seq
26
total RNA-seq
14
ATAC-seq
1
single cell RNA-seq
Assay category
197
DNA accessibility
41
DNA binding
27
Transcription
Target of assay
35
histone
35
histone modification
18
narrow histone mark
17
broad histone mark
4
control
2
RNA binding protein
2
transcription factor
Date released
587
February, 2021
411
August, 2017
406
November, 2017
333
May, 2020
316
August, 2021
309
May, 2021
291
October, 2019
200
May, 2022
194
February, 2023
192
June, 2019
162
July, 2018
117
May, 2019
106
July, 2019
90
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
59
September, 2020
49
April, 2018
47
March, 2020
47
September, 2023
40
May, 2024
39
February, 2018
39
November, 2019
35
December, 2018
30
January, 2019
24
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
15
May, 2023
11
September, 2017
10
November, 2020
8
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
4
August, 2018
4
October, 2022
2
June, 2018
1
August, 2022
1
March, 2023
Available data
264
bam
260
bigWig
234
bed narrowPeak
202
bigBed narrowPeak
183
bed bed3+
183
bed broadPeak
183
bigBed broadPeak
73
fastq
26
tsv
1
csv
Organism
265
Homo sapiens
Biosample type
162
tissue
103
primary cell
Organ
77
epithelium
77
kidney
76
pancreas
34
musculature of body
31
limb
30
brain
30
heart
18
ureter
7
eye
6
connective tissue
6
vasculature
5
blood vessel
2
artery
2
liver
1
adipose tissue
Project
265
AMP
Genome assembly (visualization)
260
GRCh38
237
hg19
Lab
265
AMP-T2D consortium
Audit category:
inconsistent ontology term
Audit category:
32
missing controlled_by
lab.title!
Anna Gloyn, Oxford
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
265 results
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Clear Filters
DNase-seq
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
tissue
heart
18
muscle of arm
17
kidney
13
brain
12
muscle of leg
12
+ See 34 more…
primary cell
pancreatic ductal cell
13
4
4
pancreatic beta cell
10
4
pancreatic acinar cell
8
2
3
pancreatic alpha cell
10
3
pancreatic endocrine cell
11
+ See 19 more…
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