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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
861
total RNA-seq
717
ChIP-seq
237
ATAC-seq
179
single cell RNA-seq
87
RNA microarray
28
snATAC-seq
24
pCHi-C
23
WGBS
15
Hi-C
13
small RNA-seq
10
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
1
DNase-seq
Assay category
1053
Transcription
717
DNA binding
270
DNA accessibility
33
DNA methylation
15
3D chromatin structure
Target of assay
523
histone
523
histone modification
265
narrow histone mark
258
broad histone mark
141
control
55
transcription factor
26
RNA binding protein
3
other context
3
other post-translational modification
2
nucleotide modification
Date released
544
February, 2021
232
October, 2019
229
August, 2021
204
August, 2017
120
July, 2018
115
May, 2019
95
February, 2023
80
April, 2019
76
November, 2017
74
October, 2018
69
July, 2019
47
September, 2023
40
May, 2021
40
May, 2024
40
November, 2019
37
March, 2020
26
May, 2022
24
February, 2020
19
April, 2020
19
October, 2017
15
May, 2023
13
November, 2018
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
4
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1619
bam
1507
bigWig
922
tsv
871
bed narrowPeak
512
bigBed narrowPeak
294
fastq
bed broadPeak
199
bed bed3+
173
bigBed broadPeak
168
tagAlign
157
txt
64
xls
24
bed bedMethyl
24
bigBed bedMethyl
10
hic
9
bedpe bed3+
5
bed bed3
5
csv
1
bedpe
1
tagAlign bed3+
Organism
2203
Homo sapiens
Biosample type
2206
tissue
1027
primary cell
378
in vitro differentiated cells
258
cell line
8
stem cell
Organ
544
connective tissue
485
adipose tissue
485
pancreas
liver
286
heart
231
kidney
229
brain
158
bone element
128
blood vessel
128
vasculature
86
limb
69
artery
53
eye
41
nerve
37
musculature of body
24
spleen
20
lung
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2109
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1433
GRCh38
1294
hg19
Lab
1896
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
90
inconsistent ontology term
9
audit script error
Audit category:
24
missing controlled_by
Audit category:
5
inconsistent control read length
lab.title!
Anna Gloyn, Oxford
organ_slims!
liver
files.file_type!
bed broadPeak
BIOSAMPLE
ASSAY
2206 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
RNA microarray
snATAC-seq
pCHi-C
WGBS
Hi-C
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
DNase-seq
tissue
islet of Langerhans
292
65
66
6
7
4
3
1
1
4
1
adipose tissue
382
2
3
1
3
kidney
49
27
75
64
6
1
1
1
bone element
84
heart left ventricle
3
35
2
18
1
4
1
1
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