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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
935
total RNA-seq
668
ChIP-seq
220
ATAC-seq
178
single cell RNA-seq
170
DNase-seq
87
RNA microarray
28
snATAC-seq
25
pCHi-C
18
WGBS
16
Hi-C
16
small RNA-seq
6
RRBS
4
MeRIP-seq
3
FAIRE-seq
3
snDrop-seq
Assay category
1129
Transcription
668
DNA binding
421
DNA accessibility
24
DNA methylation
16
3D chromatin structure
Target of assay
460
histone
460
histone modification
260
narrow histone mark
200
broad histone mark
140
control
70
transcription factor
25
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
August, 2017
227
August, 2021
193
May, 2020
174
October, 2019
161
June, 2019
120
July, 2018
110
May, 2019
82
November, 2017
80
April, 2019
76
July, 2019
74
October, 2018
66
May, 2022
60
February, 2023
48
December, 2017
47
September, 2023
40
March, 2020
40
May, 2021
40
May, 2024
40
November, 2019
26
November, 2018
23
October, 2017
22
February, 2020
19
April, 2020
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1661
bam
1536
bigWig
978
tsv
829
bed narrowPeak
488
bigBed narrowPeak
202
fastq
181
bed broadPeak
179
tagAlign
173
bed bed3+
170
bigBed broadPeak
157
txt
64
xls
20
bed bedMethyl
20
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2375
Homo sapiens
Biosample type
2377
tissue
1027
primary cell
594
cell line
326
in vitro differentiated cells
8
stem cell
Organ
490
connective tissue
431
adipose tissue
358
pancreas
313
heart
307
liver
299
kidney
265
brain
158
bone element
133
blood vessel
133
vasculature
122
limb
artery
56
eye
56
musculature of body
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2280
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1608
GRCh38
1517
hg19
Lab
2025
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
91
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
4
missing controlled_by
Audit category:
1
inconsistent control read length
lab.title!
Anna Gloyn, Oxford
organ_slims!
nerve
artery
month_released!
August, 2017
BIOSAMPLE
ASSAY
2377 results
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total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
snATAC-seq
pCHi-C
WGBS
Hi-C
small RNA-seq
RRBS
MeRIP-seq
FAIRE-seq
snDrop-seq
tissue
adipose tissue
382
3
1
islet of Langerhans
203
29
68
6
7
4
3
1
4
liver
167
97
20
1
2
1
1
1
kidney
49
27
75
64
13
6
1
1
1
bone element
84
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