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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
387
total RNA-seq
18
ChIP-seq
3
ATAC-seq
2
DNase-seq
2
WGBS
Assay category
387
Transcription
18
DNA binding
5
DNA accessibility
2
DNA methylation
Target of assay
17
transcription factor
5
RNA binding protein
1
histone
1
histone modification
1
narrow histone mark
Date released
386
February, 2021
16
August, 2017
July, 2019
5
October, 2018
1
June, 2019
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
Available data
411
bam
410
bigWig
386
tsv
23
fastq
11
bed narrowPeak
9
bigBed narrowPeak
6
bed bed3+
2
bed bedMethyl
2
bed broadPeak
2
bigBed bedMethyl
2
bigBed broadPeak
Organism
412
Homo sapiens
Biosample type
412
tissue
Organ
631
pancreas
550
connective tissue
524
liver
412
adipose tissue
289
epithelium
245
heart
205
brain
199
kidney
183
vasculature
179
blood vessel
125
artery
95
limb
66
bone element
54
blood
54
bodily fluid
48
musculature of body
31
nerve
29
embryo
18
ureter
16
spleen
12
vein
8
skeleton
6
eye
1
pituitary gland
Project
412
AMP
Genome assembly (visualization)
414
hg19
412
GRCh38
Lab
412
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
lab.title!
Anna Gloyn, Oxford
month_released!
July, 2019
BIOSAMPLE
ASSAY
412 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
WGBS
tissue
adipose tissue
382
1
2
white adipose tissue
12
omental fat pad
3
1
2
subcutaneous adipose tissue
2
2
1
visceral abdominal adipose tissue
3
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