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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
total RNA-seq
73
ChIP-seq
6
ATAC-seq
6
WGBS
3
small RNA-seq
1
DNase-seq
1
RNA microarray
1
pCHi-C
Assay category
401
Transcription
73
DNA binding
7
DNA accessibility
6
DNA methylation
Target of assay
32
histone
32
histone modification
24
control
20
broad histone mark
17
transcription factor
12
narrow histone mark
5
RNA binding protein
Date released
386
February, 2021
57
August, 2017
23
October, 2018
12
July, 2019
2
February, 2020
1
August, 2021
1
February, 2023
1
January, 2018
1
June, 2019
1
March, 2020
1
May, 2023
November, 2018
1
November, 2019
1
October, 2017
1
October, 2019
Available data
441
bam
424
bigWig
401
tsv
43
fastq
12
bed narrowPeak
9
bigBed narrowPeak
8
tagAlign
5
bed bed3+
2
bed bedMethyl
2
bed broadPeak
2
bigBed bedMethyl
bedpe bed3+
1
bigBed broadPeak
Organism
488
Homo sapiens
Biosample type
487
tissue
2
primary cell
Organ
932
pancreas
736
liver
682
connective tissue
519
epithelium
489
adipose tissue
390
heart
354
kidney
284
brain
234
vasculature
228
blood vessel
159
bone element
141
artery
122
limb
94
musculature of body
61
eye
54
blood
54
bodily fluid
43
nerve
37
embryo
21
vein
20
lung
18
ureter
16
skeleton
16
spleen
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
489
AMP
Genome assembly (visualization)
425
hg19
423
GRCh38
Lab
489
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
lab.title!
Anna Gloyn, Oxford
month_released!
November, 2018
files.file_type!
bedpe bed3+
BIOSAMPLE
ASSAY
489 results
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total RNA-seq
ChIP-seq
ATAC-seq
WGBS
small RNA-seq
DNase-seq
RNA microarray
pCHi-C
tissue
adipose tissue
382
2
3
3
1
subcutaneous abdominal adipose tissue
36
3
subcutaneous adipose tissue
7
12
1
1
1
omental fat pad
5
11
1
1
1
white adipose tissue
12
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primary cell
mesenchymal stem cell of adipose
1
1
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