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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
534
ChIP-seq
180
total RNA-seq
ATAC-seq
6
DNase-seq
5
WGBS
3
Hi-C
3
pCHi-C
3
small RNA-seq
2
RRBS
1
single cell RNA-seq
Assay category
534
DNA binding
184
Transcription
7
DNA methylation
6
DNA accessibility
3
3D chromatin structure
Target of assay
327
transcription factor
104
control
100
histone modification
99
histone
82
recombinant protein
58
narrow histone mark
57
RNA binding protein
41
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
315
November, 2017
194
May, 2020
63
December, 2017
53
August, 2017
53
November, 2018
20
May, 2022
10
July, 2019
6
October, 2019
5
December, 2019
5
January, 2019
4
August, 2021
3
March, 2020
2
February, 2021
2
June, 2019
1
December, 2018
1
February, 2020
Available data
678
bam
587
bigWig
464
fastq
404
bed narrowPeak
357
bigBed narrowPeak
165
tsv
86
tagAlign
63
bed broadPeak
63
bigBed broadPeak
13
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
1
bedpe bed3+
1
csv
1
hdf5
1
hic
Organism
737
Homo sapiens
Biosample type
369
cell line
340
tissue
15
in vitro differentiated cells
13
primary cell
Organ
791
pancreas
737
liver
659
connective tissue
485
adipose tissue
421
epithelium
346
heart
282
brain
277
kidney
190
vasculature
184
blood vessel
147
bone element
114
limb
96
artery
95
musculature of body
68
blood
68
bodily fluid
42
nerve
37
embryo
33
eye
24
spleen
22
vein
20
lung
18
ureter
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
737
AMP
Genome assembly (visualization)
587
hg19
528
GRCh38
Lab
717
AMP-T2D consortium
Bing Ren, UCSD
20
Karen Mohlke, UNC
Audit category:
27
inconsistent control
Audit category:
13
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
lab.title!
Anna Gloyn, Oxford
Bing Ren, UCSD
assay_title!
ATAC-seq
BIOSAMPLE
ASSAY
737 results
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ChIP-seq
total RNA-seq
DNase-seq
WGBS
Hi-C
pCHi-C
small RNA-seq
RRBS
single cell RNA-seq
cell line
HepG2
360
5
1
1
2
tissue
liver
145
167
2
3
1
1
1
1
1
right lobe of liver
10
3
2
1
2
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
4
5
1
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
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