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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
552
ChIP-seq
189
total RNA-seq
22
ATAC-seq
5
WGBS
4
DNase-seq
4
Hi-C
3
small RNA-seq
2
RRBS
2
STARR-seq
2
pCHi-C
1
whole genome sequencing assay
Assay category
552
DNA binding
192
Transcription
26
DNA accessibility
7
DNA methylation
4
3D chromatin structure
1
DNA sequencing
Target of assay
338
transcription factor
108
control
103
histone modification
102
histone
82
recombinant protein
60
narrow histone mark
58
RNA binding protein
42
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
315
November, 2017
194
May, 2020
63
December, 2017
54
August, 2017
53
November, 2018
40
May, 2022
35
August, 2021
10
July, 2019
7
October, 2019
5
December, 2019
5
January, 2019
February, 2021
3
March, 2020
June, 2019
1
December, 2018
1
February, 2020
Available data
678
bam
620
bigWig
465
fastq
438
bed narrowPeak
356
bigBed narrowPeak
174
tsv
86
tagAlign
61
bed broadPeak
61
bigBed broadPeak
10
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
hdf5
1
vcf
Organism
786
Homo sapiens
Biosample type
399
cell line
360
tissue
15
in vitro differentiated cells
12
primary cell
Organ
910
pancreas
786
liver
472
epithelium
292
heart
265
kidney
256
brain
211
connective tissue
163
vasculature
159
blood vessel
104
adipose tissue
84
limb
73
artery
69
blood
69
bodily fluid
54
eye
53
musculature of body
43
nerve
37
embryo
25
spleen
22
vein
20
lung
9
bone element
8
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
786
AMP
Genome assembly (visualization)
621
hg19
528
GRCh38
Lab
715
AMP-T2D consortium
40
Karen Mohlke, UNC
31
Bing Ren, UCSD
Audit category:
27
inconsistent control
1
inconsistent ontology term
Audit category:
13
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
lab.title!
Anna Gloyn, Oxford
month_released!
February, 2021
June, 2019
BIOSAMPLE
ASSAY
786 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
WGBS
DNase-seq
Hi-C
small RNA-seq
RRBS
STARR-seq
pCHi-C
whole genome sequencing assay
cell line
HepG2
378
14
1
2
2
1
1
tissue
liver
145
167
20
3
2
1
1
1
1
right lobe of liver
10
3
1
1
2
2
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
4
5
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
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