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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
498
ChIP-seq
189
total RNA-seq
24
ATAC-seq
8
snATAC-seq
6
DNase-seq
5
WGBS
4
Hi-C
3
pCHi-C
3
small RNA-seq
2
RRBS
2
STARR-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
498
DNA binding
193
Transcription
38
DNA accessibility
7
DNA methylation
4
3D chromatin structure
1
DNA sequencing
Target of assay
389
transcription factor
control
104
histone modification
103
histone
82
recombinant protein
68
RNA binding protein
61
narrow histone mark
42
broad histone mark
33
chromatin remodeller
2
other context
2
other post-translational modification
Date released
259
November, 2017
171
May, 2020
65
November, 2018
50
December, 2017
43
August, 2017
40
May, 2022
30
August, 2021
28
December, 2018
20
January, 2019
10
July, 2019
8
January, 2021
7
October, 2019
5
December, 2019
3
February, 2021
3
March, 2020
2
June, 2019
1
February, 2020
1
January, 2018
Available data
664
bigWig
634
bam
495
bed narrowPeak
442
fastq
412
bigBed narrowPeak
174
tsv
63
bed broadPeak
63
bigBed broadPeak
58
tagAlign
12
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
746
Homo sapiens
Biosample type
396
cell line
315
tissue
21
primary cell
14
in vitro differentiated cells
Organ
893
pancreas
683
liver
649
connective tissue
494
epithelium
467
adipose tissue
373
heart
342
kidney
255
brain
214
vasculature
209
blood vessel
159
bone element
132
artery
105
limb
90
musculature of body
63
blood
63
bodily fluid
60
eye
32
nerve
30
embryo
20
lung
20
vein
18
ureter
17
spleen
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
738
AMP
8
T1D
Genome assembly (visualization)
666
hg19
584
GRCh38
Lab
671
AMP-T2D consortium
40
Karen Mohlke, UNC
27
Bing Ren, UCSD
8
Kyle Gaulton, UCSD
Audit category:
28
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
lab.title!
Anna Gloyn, Oxford
target.investigated_as!
control
BIOSAMPLE
ASSAY
746 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
snATAC-seq
DNase-seq
WGBS
Hi-C
pCHi-C
small RNA-seq
RRBS
STARR-seq
single cell RNA-seq
whole genome sequencing assay
cell line
HepG2
318
14
1
1
2
2
2
1
GM12878
54
1
tissue
liver
102
167
20
2
3
1
1
1
1
1
right lobe of liver
7
3
1
2
1
2
primary cell
hepatocyte
3
5
1
1
peripheral blood mononuclear cell
8
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
in vitro differentiated cells
hepatocyte
14
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