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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
300
ChIP-seq
201
total RNA-seq
33
DNase-seq
25
ATAC-seq
7
small RNA-seq
6
Hi-C
5
pCHi-C
4
single cell RNA-seq
3
RRBS
3
WGBS
2
STARR-seq
1
FAIRE-seq
1
whole genome sequencing assay
Assay category
300
DNA binding
212
Transcription
59
DNA accessibility
6
3D chromatin structure
6
DNA methylation
1
DNA sequencing
Target of assay
235
histone
235
histone modification
154
narrow histone mark
81
broad histone mark
57
control
11
transcription factor
1
RNA binding protein
Date released
194
May, 2020
93
October, 2019
82
November, 2017
40
May, 2022
35
August, 2021
32
June, 2019
28
July, 2019
28
May, 2019
26
August, 2017
13
February, 2020
6
October, 2017
5
December, 2019
5
March, 2020
3
February, 2021
1
February, 2023
Available data
924
bam
844
bigWig
644
bed narrowPeak
fastq
485
bigBed narrowPeak
204
tagAlign
200
tsv
110
bed broadPeak
101
bigBed broadPeak
48
bed bed3+
5
bed bedMethyl
5
bigBed bedMethyl
4
hdf5
3
tar
2
bed bed3
2
bedpe bed3+
2
hic
1
csv
1
tagAlign bed3+
1
vcf
Organism
591
Homo sapiens
Biosample type
531
tissue
34
cell line
26
primary cell
Organ
583
connective tissue
475
pancreas
447
adipose tissue
393
heart
354
kidney
326
liver
267
epithelium
265
brain
230
vasculature
227
blood vessel
159
bone element
141
artery
122
limb
94
musculature of body
61
eye
43
nerve
22
vein
20
lung
18
ureter
16
skeleton
10
embryo
9
blood
9
bodily fluid
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
591
AMP
Genome assembly (visualization)
390
GRCh38
382
hg19
Lab
520
AMP-T2D consortium
40
Karen Mohlke, UNC
31
Bing Ren, UCSD
Audit category:
4
inconsistent ontology term
1
inconsistent replicate
lab.title!
Anna Gloyn, Oxford
files.file_type!
fastq
BIOSAMPLE
ASSAY
591 results
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ChIP-seq
total RNA-seq
DNase-seq
ATAC-seq
small RNA-seq
Hi-C
pCHi-C
single cell RNA-seq
RRBS
WGBS
STARR-seq
FAIRE-seq
whole genome sequencing assay
tissue
liver
78
167
20
1
1
1
1
2
brain
11
1
12
1
1
layer of hippocampus
23
caudate nucleus
15
1
1
substantia nigra
16
1
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cell line
HepG2
18
9
1
1
2
2
1
primary cell
hepatocyte
4
5
1
1
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
brain pericyte
1
1
cerebellar granule cell
2
+ See 6 more…
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