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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
388
ChIP-seq
18
total RNA-seq
4
STARR-seq
4
pCHi-C
2
Hi-C
1
ATAC-seq
1
DNase-seq
1
WGBS
1
whole genome sequencing assay
Assay category
388
DNA binding
18
Transcription
2
3D chromatin structure
2
DNA accessibility
1
DNA methylation
1
DNA sequencing
Target of assay
304
transcription factor
89
recombinant protein
63
control
54
RNA binding protein
20
chromatin remodeller
18
histone
18
histone modification
9
broad histone mark
9
narrow histone mark
2
other context
2
other post-translational modification
Date released
315
November, 2017
46
November, 2018
33
August, 2021
15
October, 2019
5
January, 2019
2
February, 2021
2
March, 2020
1
December, 2018
1
May, 2020
Available data
381
bam
367
fastq
344
bigWig
316
bed narrowPeak
294
bigBed narrowPeak
58
bed broadPeak
58
bigBed broadPeak
21
tsv
12
tagAlign
3
tar
1
bed bed3
1
bed bed3+
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hic
1
vcf
Organism
420
Homo sapiens
Biosample type
660
tissue
420
cell line
50
primary cell
15
in vitro differentiated cells
Organ
401
liver
92
pancreas
79
epithelium
66
artery
66
blood vessel
66
heart
66
vasculature
61
blood
61
bodily fluid
19
kidney
8
embryo
1
mammary gland
Project
420
AMP
Genome assembly (visualization)
342
hg19
280
GRCh38
Lab
387
AMP-T2D consortium
33
Bing Ren, UCSD
Audit category:
15
inconsistent ontology term
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
26
inconsistent control read length
8
inconsistent control run_type
lab.title!
Anna Gloyn, Oxford
BIOSAMPLE
ASSAY
420 results
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ChIP-seq
total RNA-seq
STARR-seq
pCHi-C
Hi-C
ATAC-seq
DNase-seq
WGBS
whole genome sequencing assay
cell line
HepG2
378
14
2
2
2
1
1
1
RCC 7860 HIF1a re-expression
4
1
RCC 7860 vector
3
1
1
RCC 7860 HIF2a over-expression
3
1
HEK293T
2
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