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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
132
ChIP-seq
Assay category
132
DNA binding
Target of assay
348
transcription factor
133
histone modification
132
histone
120
control
89
recombinant protein
75
narrow histone mark
61
RNA binding protein
57
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
32
August, 2017
27
May, 2020
18
April, 2019
17
December, 2017
15
November, 2017
13
October, 2019
6
August, 2021
3
May, 2019
1
June, 2019
Available data
112
bigWig
110
bed narrowPeak
109
bam
58
tagAlign
57
bigBed narrowPeak
44
fastq
14
bed broadPeak
14
bigBed broadPeak
3
bed bed3+
Organism
132
Homo sapiens
Biosample type
89
tissue
18
cell line
13
primary cell
12
in vitro differentiated cells
Organ
187
brain
151
pancreas
102
liver
97
heart
93
epithelium
78
connective tissue
71
vasculature
70
blood vessel
49
limb
33
musculature of body
32
adipose tissue
30
kidney
24
nerve
20
artery
15
vein
12
embryo
6
spleen
4
gonad
4
ovary
3
eye
1
blood
1
bodily fluid
1
lymph node
1
pituitary gland
Project
132
AMP
Genome assembly (visualization)
112
hg19
99
GRCh38
Lab
129
AMP-T2D consortium
3
Bing Ren, UCSD
Audit category:
2
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
12
inconsistent control read length
lab.title!
Anna Gloyn, Oxford
BIOSAMPLE
ASSAY
132 results
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Clear Filters
ChIP-seq
tissue
liver
64
kidney
20
right lobe of liver
5
cell line
HepG2
18
primary cell
epithelial cell of proximal tubule
7
hepatocyte
3
kidney epithelial cell
3
in vitro differentiated cells
hepatocyte
12
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