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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
12
ChIP-seq
4
Hi-C
3
pCHi-C
2
RRBS
2
total RNA-seq
1
WGBS
1
single cell RNA-seq
Assay category
12
DNA binding
4
3D chromatin structure
3
DNA methylation
3
Transcription
Target of assay
6
control
6
histone
6
histone modification
4
broad histone mark
2
narrow histone mark
Date released
11
August, 2017
5
July, 2019
2
February, 2020
2
June, 2019
2
March, 2020
1
May, 2019
1
May, 2021
1
May, 2022
Available data
4
bam
4
tsv
2
tagAlign
1
bed bedMethyl
1
bigBed bedMethyl
1
bigWig
Organism
25
Homo sapiens
Biosample type
23
tissue
2
primary cell
Organ
288
pancreas
225
kidney
213
epithelium
205
heart
166
liver
122
brain
95
connective tissue
89
bone element
71
blood vessel
71
vasculature
65
adipose tissue
48
artery
27
eye
26
limb
23
musculature of body
20
lung
14
blood
14
bodily fluid
12
nerve
11
spleen
8
embryo
5
gonad
5
ovary
5
vein
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
24
AMP
1
T1D
Genome assembly (visualization)
hg19
53
GRCh38
Lab
24
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
1
inconsistent ontology term
lab.title!
Anna Gloyn, Oxford
assembly!
hg19
BIOSAMPLE
ASSAY
25 results
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ChIP-seq
Hi-C
pCHi-C
RRBS
total RNA-seq
WGBS
single cell RNA-seq
tissue
skeletal muscle tissue
9
2
1
gastrocnemius medialis
4
1
muscle of leg
1
1
thymus
2
left ventricle myocardium
1
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primary cell
skeletal muscle cell
1
skeletal muscle satellite cell
1
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