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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
39
ChIP-seq
33
DNase-seq
6
Hi-C
6
total RNA-seq
2
RRBS
2
small RNA-seq
1
ATAC-seq
1
pCHi-C
1
single cell RNA-seq
Assay category
39
DNA binding
34
DNA accessibility
9
Transcription
6
3D chromatin structure
2
DNA methylation
Target of assay
33
histone
33
histone modification
20
broad histone mark
13
narrow histone mark
6
control
Date released
43
June, 2019
24
August, 2017
8
July, 2019
7
May, 2019
5
March, 2020
2
February, 2020
1
January, 2018
1
May, 2022
Available data
68
bigWig
60
bed narrowPeak
57
bam
47
bigBed narrowPeak
46
bed broadPeak
33
bed bed3+
33
bigBed broadPeak
15
tagAlign
9
tsv
4
bed bedMethyl
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
Organism
91
Homo sapiens
Biosample type
78
tissue
13
primary cell
Organ
936
pancreas
788
liver
681
connective tissue
513
epithelium
489
adipose tissue
385
heart
343
kidney
284
brain
233
vasculature
228
blood vessel
159
bone element
141
artery
121
limb
91
musculature of body
69
blood
69
bodily fluid
60
eye
43
nerve
37
embryo
23
spleen
21
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
91
AMP
Genome assembly (visualization)
69
hg19
52
GRCh38
Lab
91
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
audit script error
lab.title!
Anna Gloyn, Oxford
audit.ERROR.category!
audit script error
files.file_type!
bigBed bedMethyl
BIOSAMPLE
ASSAY
91 results
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ChIP-seq
DNase-seq
Hi-C
total RNA-seq
RRBS
small RNA-seq
ATAC-seq
pCHi-C
single cell RNA-seq
tissue
skeletal muscle tissue
22
1
2
1
1
1
muscle of leg
7
13
muscle of arm
17
gastrocnemius medialis
4
1
psoas muscle
2
2
1
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primary cell
skeletal muscle satellite cell
8
1
1
skeletal muscle cell
2
1
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