Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
17
total RNA-seq
small RNA-seq
3
single cell RNA-seq
2
pCHi-C
Assay category
20
Transcription
Target of assay
3
control
Date released
12
February, 2020
7
July, 2019
2
March, 2020
1
October, 2019
Available data
239
bam
218
bigWig
203
bed narrowPeak
127
bigBed narrowPeak
118
tagAlign
47
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
22
tsv
21
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
22
Homo sapiens
Biosample type
19
tissue
3
primary cell
Organ
475
connective tissue
414
pancreas
398
adipose tissue
167
heart
162
liver
156
epithelium
68
blood vessel
68
vasculature
58
artery
58
bone element
23
kidney
22
brain
14
embryo
7
limb
7
musculature of body
5
eye
5
nerve
2
intestine
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
pericardium
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
thymus
1
urinary bladder
Project
22
AMP
Genome assembly (visualization)
8
GRCh38
8
hg19
Lab
22
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
lab.title!
Bing Ren, UCSD
assay_title!
small RNA-seq
BIOSAMPLE
ASSAY
22 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
single cell RNA-seq
pCHi-C
tissue
Ammon's horn
1
1
cerebellum
2
frontal cortex
2
amygdala
1
anterior cingulate cortex
1
+ See 11 more…
primary cell
cerebellar granule cell
2
Purkinje cell
1
See all biosamples
Download