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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1853
ChIP-seq
1523
total RNA-seq
530
ATAC-seq
363
single cell RNA-seq
212
DNase-seq
87
RNA microarray
84
snATAC-seq
75
WGBS
57
pCHi-C
31
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
530
DNA accessibility
31
3D chromatin structure
21
DNA methylation
Date released
103
February, 2023
100
May, 2020
77
August, 2021
77
May, 2022
34
May, 2021
29
July, 2019
28
November, 2019
27
October, 2019
22
February, 2021
14
March, 2020
14
September, 2018
11
August, 2017
11
May, 2023
8
October, 2017
7
August, 2020
5
September, 2017
3
January, 2018
3
March, 2019
3
October, 2022
3
September, 2020
1
December, 2018
1
March, 2023
1
November, 2020
Available data
278
bed narrowPeak
175
bam
141
bigWig
66
fastq
64
xls
39
zippedFastqFolder
27
bigBed narrowPeak
21
hic
19
bed bedMethyl
19
bigBed bedMethyl
18
bedpe bed3+
14
tsv
12
bed bed3
9
bed bed3+
7
bed bedgraph
5
hdf5
3
cool
3
txt
2
bed broadPeak
Organism
582
Homo sapiens
Biosample type
284
tissue
220
primary cell
46
in vitro differentiated cells
32
cell line
Organ
160
pancreas
117
epithelium
80
kidney
52
heart
52
vasculature
51
blood vessel
45
artery
29
eye
28
liver
27
connective tissue
12
bone element
12
limb
12
musculature of body
12
skeleton
9
brain
6
adipose tissue
2
vein
1
blood
1
bodily fluid
1
nerve
1
pericardium
1
pituitary gland
1
skin of body
1
spleen
Project
518
AMP
52
HPAP
11
T1D
1
ITG
Genome assembly (visualization)
304
hg19
235
GRCh38
Lab
390
AMP-T2D consortium
76
Katalin Susztak, Upenn
52
Klaus Kaestner, Upenn
34
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
5
Struan F.A. Grant, CHOP
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
49
inconsistent ontology term
4
audit script error
1
inconsistent replicate
Audit category:
1
inconsistent assembly
lab.title!
Bing Ren, UCSD
BIOSAMPLE
ASSAY
582 results
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Clear Filters
ATAC-seq
Hi-C
RRBS
tissue
kidney
75
1
1
islet of Langerhans
67
1
1
coronary artery
36
liver
20
1
1
retina
15
+ See 36 more…
primary cell
pancreatic alpha cell
35
1
pancreatic beta cell
23
1
CD4-positive, alpha-beta memory T cell
22
naive thymus-derived CD4-positive, alpha-beta T cell
22
monocyte
15
+ See 50 more…
in vitro differentiated cells
neural progenitor cell
10
adipocyte
8
embryonic stem cell
6
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
chondrocyte
5
+ See 8 more…
cell line
EndoC_BH1
19
1
smooth muscle cell of the coronary artery
8
HepG2
1
1
GM12878
1
Panc1
1
See all biosamples
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