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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
276
total RNA-seq
194
ChIP-seq
187
ATAC-seq
152
single cell RNA-seq
snATAC-seq
47
WGBS
17
pCHi-C
10
MeRIP-seq
5
Hi-C
3
CRISPR genome editing followed by DNA sequencing
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
276
Transcription
Date released
81
February, 2023
59
May, 2021
49
August, 2021
45
May, 2020
26
May, 2022
16
September, 2020
Available data
102
bam
98
bigWig
98
fastq
96
tsv
55
txt
2
bed bed3+
Organism
276
Homo sapiens
Biosample type
190
primary cell
81
tissue
5
in vitro differentiated cells
Organ
65
pancreas
53
epithelium
49
kidney
20
liver
Project
101
T1D
92
HPAP
83
AMP
Genome assembly (visualization)
98
hg19
96
GRCh38
Lab
AMP-T2D consortium
115
Kyle Gaulton, UCSD
92
Klaus Kaestner, Upenn
49
Katalin Susztak, Upenn
20
Karen Mohlke, UNC
Bing Ren, UCSD
Audit category:
4
inconsistent ontology term
lab.title!
Bing Ren, UCSD
AMP-T2D consortium
assay_title!
snATAC-seq
BIOSAMPLE
ASSAY
276 results
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total RNA-seq
primary cell
monocyte
53
pancreatic alpha cell
42
exocrine cell
39
pancreatic beta cell
11
CD8-positive, alpha-beta T cell
4
+ See 23 more…
tissue
kidney
49
liver
20
islet of Langerhans
11
pancreas
1
in vitro differentiated cells
embryonic stem cell
5
See all biosamples
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