Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
single cell RNA-seq
49
total RNA-seq
9
ChIP-seq
6
snATAC-seq
4
Capture-C
2
ATAC-seq
1
Hi-C
1
RNA microarray
Assay category
155
Transcription
9
DNA binding
8
DNA accessibility
1
3D chromatin structure
Target of assay
8
control
1
broad histone mark
1
histone
1
histone modification
Date released
200
May, 2022
178
August, 2021
170
February, 2023
162
August, 2017
147
February, 2021
134
May, 2020
126
November, 2017
123
May, 2021
107
October, 2019
56
September, 2020
48
March, 2020
47
September, 2023
29
July, 2019
29
October, 2018
25
February, 2020
24
May, 2019
19
April, 2020
17
December, 2017
16
April, 2019
16
January, 2021
10
November, 2020
9
November, 2018
9
October, 2017
8
February, 2018
8
January, 2018
8
June, 2019
5
December, 2018
5
December, 2019
4
January, 2019
4
July, 2018
4
March, 2023
4
November, 2019
4
October, 2022
4
September, 2017
3
May, 2023
2
March, 2019
1
August, 2018
1
August, 2022
1
September, 2018
Available data
98
tsv
57
txt
8
bam
8
tagAlign
2
bed bed3+
2
bed narrowPeak
2
bigWig
1
hic
Organism
177
Homo sapiens
Biosample type
163
tissue
12
in vitro differentiated cells
2
cell line
1
primary cell
Organ
92
heart
64
kidney
6
blood vessel
6
vasculature
5
connective tissue
3
epithelium
2
artery
2
pancreas
1
adipose tissue
1
liver
Project
178
AMP
Genome assembly (visualization)
GRCh38
45
hg19
Lab
110
AMP-T2D consortium
64
Katalin Susztak, Upenn
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
2
inconsistent ontology term
lab.title!
Bing Ren, UCSD
assembly!
GRCh38
BIOSAMPLE
ASSAY
178 results
search-icon
table-tab-icon
Clear Filters
single cell RNA-seq
total RNA-seq
ChIP-seq
snATAC-seq
Capture-C
ATAC-seq
Hi-C
RNA microarray
tissue
kidney
8
49
6
1
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 10 more…
in vitro differentiated cells
neural progenitor cell
8
adipocyte
1
1
osteoblast
1
1
cell line
EndoC_BH1
2
primary cell
hepatocyte
1
See all biosamples
Download