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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
399
ChIP-seq
104
total RNA-seq
3
ATAC-seq
2
DNase-seq
1
GRO-seq
1
Hi-C
1
WGBS
Assay category
399
DNA binding
104
Transcription
5
DNA accessibility
1
3D chromatin structure
1
DNA methylation
Target of assay
345
transcription factor
88
recombinant protein
62
RNA binding protein
36
histone
36
histone modification
30
chromatin remodeller
18
broad histone mark
18
narrow histone mark
13
control
2
other context
2
other post-translational modification
Date released
268
November, 2017
83
February, 2021
57
November, 2018
27
December, 2018
20
January, 2019
20
October, 2019
12
November, 2019
8
August, 2021
7
March, 2020
5
May, 2021
2
December, 2017
2
January, 2018
Available data
585
bam
511
bigWig
431
fastq
392
bed narrowPeak
355
bigBed narrowPeak
114
tsv
59
bed broadPeak
59
bigBed broadPeak
20
tagAlign
6
bed bed3+
3
tar
1
bed bed3
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hdf5
1
hic
1
txt
Organism
511
Homo sapiens
Biosample type
1732
tissue
613
primary cell
508
cell line
259
in vitro differentiated cells
3
stem cell
Organ
318
liver
56
artery
56
blood vessel
56
heart
56
pancreas
56
vasculature
55
blood
55
bodily fluid
50
epithelium
12
kidney
8
embryo
Project
507
AMP
4
T1D
Genome assembly (visualization)
505
hg19
456
GRCh38
1
hg18
Lab
511
AMP-T2D consortium
Bing Ren, UCSD
Audit category:
58
inconsistent ontology term
1
inconsistent control
Audit category:
12
missing controlled_by
Audit category:
28
inconsistent control read length
8
inconsistent control run_type
1
inconsistent assembly
lab.title!
Bing Ren, UCSD
BIOSAMPLE
ASSAY
511 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
GRO-seq
Hi-C
WGBS
cell line
HepG2
312
5
1
smooth muscle cell of the coronary artery
4
52
GM12878
54
1
EndoC_BH1
13
33
2
H1-hESC
8
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stem cell
hESC
2
1
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