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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1030
total RNA-seq
530
ChIP-seq
256
ATAC-seq
180
single cell RNA-seq
87
RNA microarray
28
snATAC-seq
27
WGBS
25
pCHi-C
16
small RNA-seq
14
Hi-C
11
RRBS
4
MeRIP-seq
3
snDrop-seq
1
DNase-seq
Assay category
1226
Transcription
530
DNA binding
285
DNA accessibility
38
DNA methylation
14
3D chromatin structure
Target of assay
316
histone modification
315
histone
216
narrow histone mark
187
control
99
broad histone mark
29
transcription factor
8
RNA binding protein
2
nucleotide modification
Date released
545
February, 2021
262
August, 2017
227
August, 2021
195
October, 2019
193
May, 2020
120
July, 2018
95
February, 2023
75
July, 2019
66
May, 2022
47
September, 2023
40
March, 2020
40
May, 2021
40
May, 2024
40
November, 2019
29
October, 2018
25
February, 2020
25
November, 2017
22
May, 2019
19
April, 2020
17
October, 2017
16
April, 2019
15
May, 2023
12
December, 2017
9
November, 2018
8
January, 2021
6
April, 2018
6
September, 2017
4
December, 2018
4
November, 2020
3
December, 2019
3
March, 2019
2
January, 2018
1
August, 2022
1
January, 2019
Available data
1907
bam
1772
bigWig
1075
tsv
984
bed narrowPeak
bigBed narrowPeak
377
fastq
238
tagAlign
213
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
10
hic
9
bedpe bed3+
6
csv
5
bed bed3
1
tagAlign bed3+
Organism
2209
Homo sapiens
Biosample type
2212
tissue
979
primary cell
377
in vitro differentiated cells
273
cell line
10
stem cell
Organ
537
connective tissue
478
adipose tissue
439
pancreas
312
liver
225
heart
212
kidney
158
bone element
149
brain
71
blood vessel
71
vasculature
53
eye
48
artery
44
musculature of body
38
limb
20
lung
17
nerve
16
skeleton
15
epithelium
12
spleen
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2115
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1303
GRCh38
1260
hg19
Lab
1864
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
90
inconsistent ontology term
9
audit script error
Audit category:
23
missing controlled_by
lab.title!
Bing Ren, UCSD
files.file_type!
bigBed narrowPeak
BIOSAMPLE
ASSAY
2212 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
small RNA-seq
Hi-C
RRBS
MeRIP-seq
snDrop-seq
DNase-seq
tissue
islet of Langerhans
291
71
67
6
7
4
1
1
4
adipose tissue
382
1
2
3
1
liver
167
107
20
1
3
1
1
1
1
kidney
49
9
75
64
6
1
1
bone element
84
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