Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
81
total RNA-seq
66
single cell RNA-seq
54
ChIP-seq
10
ATAC-seq
6
WGBS
Assay category
147
Transcription
54
DNA binding
10
DNA accessibility
6
DNA methylation
Target of assay
37
histone
37
histone modification
21
narrow histone mark
17
control
16
broad histone mark
Date released
47
September, 2018
37
February, 2023
33
July, 2018
29
April, 2018
26
August, 2017
19
September, 2020
7
August, 2020
6
February, 2021
5
December, 2017
3
August, 2018
2
November, 2017
2
October, 2018
1
June, 2018
Available data
317
bam
301
bigWig
257
fastq
156
tsv
151
bed narrowPeak
80
zippedFastqFolder
bigBed narrowPeak
22
bed broadPeak
22
bigBed broadPeak
21
bed bed3+
7
tagAlign
6
bed bedMethyl
6
bigBed bedMethyl
6
hic
5
bedpe bed3+
3
cool
2
hdf5
1
tar
Organism
217
Homo sapiens
Biosample type
212
primary cell
5
in vitro differentiated cells
Organ
406
pancreas
217
epithelium
109
liver
92
connective tissue
36
adipose tissue
27
embryo
11
spleen
7
brain
6
blood
6
bodily fluid
2
musculature of body
2
vasculature
1
blood vessel
Project
148
AMP
69
HPAP
Genome assembly (visualization)
141
GRCh38
133
hg19
Lab
148
AMP-T2D consortium
69
Klaus Kaestner, Upenn
Audit category:
5
inconsistent ontology term
Audit category:
21
missing controlled_by
Audit category:
5
inconsistent control read length
lab.title!
Bing Ren, UCSD
files.file_type!
bigBed narrowPeak
BIOSAMPLE
ASSAY
217 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
single cell RNA-seq
ChIP-seq
ATAC-seq
WGBS
primary cell
pancreatic alpha cell
52
12
13
7
6
pancreatic beta cell
21
12
13
3
pancreatic ductal cell
4
9
13
pancreatic acinar cell
4
9
8
pancreatic delta cell
11
+ See 5 more…
in vitro differentiated cells
Hepatic endoderm
4
hepatocyte
1
See all biosamples
Download