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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
161
total RNA-seq
153
ATAC-seq
152
single cell RNA-seq
64
snATAC-seq
47
WGBS
10
MeRIP-seq
5
Hi-C
2
Capture-C
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
317
Transcription
217
DNA accessibility
47
DNA methylation
5
3D chromatin structure
Target of assay
5
control
5
nucleotide modification
Date released
174
May, 2022
132
August, 2021
79
February, 2023
59
September, 2020
47
September, 2023
45
February, 2021
19
April, 2020
14
May, 2023
10
November, 2020
7
August, 2020
5
March, 2023
3
March, 2019
3
October, 2022
1
October, 2017
Available data
171
fastq
153
zippedFastqFolder
88
bed narrowPeak
64
xls
60
txt
36
bigWig
6
tsv
5
hic
3
bed bedgraph
3
bedpe bed3+
3
cool
2
bed bed3+
2
bed broadPeak
1
bam
Organism
593
Homo sapiens
Biosample type
325
primary cell
256
tissue
8
cell line
7
in vitro differentiated cells
2
stem cell
Organ
189
kidney
166
pancreas
158
epithelium
40
liver
19
lung
4
connective tissue
Project
324
HPAP
203
AMP
47
KPMP
19
LungMap
4
community
1
ITG
Genome assembly (visualization)
88
GRCh38
33
hg19
Lab
AMP-T2D consortium
Kyle Gaulton, UCSD
324
Klaus Kaestner, Upenn
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
Bing Ren, UCSD
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
30
audit script error
7
inconsistent ontology term
lab.title!
Bing Ren, UCSD
Kyle Gaulton, UCSD
AMP-T2D consortium
BIOSAMPLE
ASSAY
598 results
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Clear Filters
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
MeRIP-seq
Hi-C
Capture-C
CRISPR RNA-seq
CRISPRi RNA-seq
shRNA RNA-seq
siRNA RNA-seq
primary cell
Langerhans cell
85
48
pancreatic alpha cell
42
29
31
1
pancreatic beta cell
11
16
16
1
exocrine cell
39
pancreatic acinar cell
4
1
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tissue
kidney
49
75
58
6
1
liver
20
20
lung
9
10
islet of Langerhans
4
4
cell line
EndoC_BH1
6
EndoC-BH1
1
1
in vitro differentiated cells
adipocyte
1
1
osteoblast
1
1
Progenitor cell of Hypothalamus (neural progenitor cell)
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
stem cell
SB Ad3.1
1
1
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