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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
15
ChIP-seq
14
total RNA-seq
1
GRO-seq
Assay category
15
DNA binding
14
Transcription
Target of assay
12
histone
12
histone modification
8
narrow histone mark
control
4
broad histone mark
3
transcription factor
Date released
10
February, 2018
9
December, 2017
8
August, 2021
2
May, 2021
1
January, 2018
Available data
29
bam
29
bigWig
20
fastq
14
bed narrowPeak
14
tsv
2
bed bed3+
Organism
30
Homo sapiens
Biosample type
22
in vitro differentiated cells
8
cell line
Organ
884
pancreas
656
liver
649
connective tissue
491
epithelium
467
adipose tissue
373
heart
340
kidney
255
brain
214
vasculature
209
blood vessel
159
bone element
132
artery
105
limb
90
musculature of body
63
blood
63
bodily fluid
60
eye
32
nerve
30
embryo
20
lung
20
vein
18
ureter
17
spleen
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
30
AMP
Genome assembly (visualization)
28
GRCh38
28
hg19
1
hg18
Lab
30
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
3
inconsistent control read length
lab.title!
Bing Ren, UCSD
Rohit N. Kulkarni, M.D., Ph.D.
target.investigated_as!
control
BIOSAMPLE
ASSAY
30 results
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ChIP-seq
total RNA-seq
GRO-seq
in vitro differentiated cells
pancreatic endoderm
13
4
1
Hepatic endoderm
2
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
cell line
H1-hESC
8
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