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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
116
ChIP-seq
21
total RNA-seq
4
WGBS
3
pCHi-C
2
ATAC-seq
2
Hi-C
2
RRBS
1
DNase-seq
1
single cell RNA-seq
Assay category
116
DNA binding
22
Transcription
6
DNA methylation
3
DNA accessibility
2
3D chromatin structure
Target of assay
91
control
20
histone
20
histone modification
12
broad histone mark
8
narrow histone mark
5
transcription factor
2
RNA binding protein
1
recombinant protein
Date released
47
November, 2017
36
August, 2017
24
May, 2020
20
May, 2022
13
December, 2017
3
February, 2021
2
July, 2019
2
March, 2020
1
August, 2021
1
December, 2018
1
February, 2020
1
November, 2018
1
October, 2019
Available data
676
bam
bigWig
465
fastq
427
bed narrowPeak
358
bigBed narrowPeak
160
tsv
86
tagAlign
63
bed broadPeak
63
bigBed broadPeak
13
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
1
bed bed3
1
bedpe bed3+
1
csv
1
hdf5
1
hic
Organism
152
Homo sapiens
Biosample type
96
tissue
52
cell line
3
primary cell
1
in vitro differentiated cells
Organ
319
pancreas
222
epithelium
218
kidney
169
heart
152
liver
114
connective tissue
101
bone element
81
vasculature
80
blood vessel
66
adipose tissue
64
brain
56
artery
55
eye
31
limb
28
musculature of body
20
lung
16
skeleton
14
blood
14
bodily fluid
12
nerve
9
spleen
8
embryo
7
vein
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
152
AMP
Genome assembly (visualization)
7
hg19
3
GRCh38
Lab
132
AMP-T2D consortium
20
Karen Mohlke, UNC
Bing Ren, UCSD
Audit category:
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
1
missing controlled_by
lab.title!
Bing Ren, UCSD
month_released!
December, 2019
files.file_type!
bigWig
BIOSAMPLE
ASSAY
152 results
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Clear Filters
ChIP-seq
total RNA-seq
WGBS
pCHi-C
ATAC-seq
Hi-C
RRBS
DNase-seq
single cell RNA-seq
tissue
liver
63
20
3
1
1
1
1
right lobe of liver
3
1
1
1
cell line
HepG2
48
2
1
1
primary cell
hepatocyte
1
1
Liver fetal (hepatocyte)
1
in vitro differentiated cells
hepatocyte
1
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