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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
100
ATAC-seq
19
DNase-seq
1
FAIRE-seq
Assay category
185
Transcription
129
DNA binding
120
DNA accessibility
53
DNA methylation
8
3D chromatin structure
Date released
39
May, 2022
16
May, 2021
14
June, 2019
14
September, 2018
12
February, 2023
7
August, 2020
7
October, 2019
5
September, 2017
3
August, 2017
September, 2020
2
March, 2020
1
November, 2019
Available data
54
bed narrowPeak
49
bigWig
42
bam
40
bigBed narrowPeak
39
zippedFastqFolder
29
fastq
16
bed bed3+
16
bed broadPeak
16
bigBed broadPeak
1
tar
1
tsv
Organism
120
Homo sapiens
Biosample type
88
primary cell
20
cell line
12
tissue
Organ
169
pancreas
163
kidney
120
epithelium
77
heart
58
vasculature
56
blood vessel
49
artery
44
limb
37
brain
35
musculature of body
34
connective tissue
32
eye
29
liver
18
ureter
12
bone element
12
skeleton
10
lung
9
blood
9
bodily fluid
8
adipose tissue
3
nerve
3
vein
2
spleen
1
pituitary gland
1
skin of body
Project
74
AMP
46
HPAP
Genome assembly (visualization)
50
hg19
48
GRCh38
Lab
74
AMP-T2D consortium
46
Klaus Kaestner, Upenn
Audit category:
21
inconsistent ontology term
lab.title!
Bing Ren, UCSD
month_released!
September, 2020
BIOSAMPLE
ASSAY
120 results
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ATAC-seq
DNase-seq
FAIRE-seq
primary cell
pancreatic alpha cell
33
pancreatic beta cell
22
pancreatic acinar cell
9
pancreatic ductal cell
4
endothelial cell of umbilical vein
2
1
+ See 13 more…
cell line
EndoC_BH1
19
glomerular visceral epithelial cell
1
tissue
pigmented layer of retina
12
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