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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
single cell RNA-seq
105
ChIP-seq
76
ATAC-seq
64
total RNA-seq
6
snATAC-seq
4
Capture-C
1
Hi-C
1
RNA microarray
Assay category
170
Transcription
105
DNA binding
82
DNA accessibility
1
3D chromatin structure
Target of assay
77
histone
77
histone modification
45
broad histone mark
32
narrow histone mark
22
control
6
transcription factor
4
RNA binding protein
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
314
October, 2019
283
August, 2021
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
3
March, 2019
1
August, 2022
Available data
157
bed narrowPeak
128
bam
113
tsv
98
bigWig
64
bigBed narrowPeak
64
xls
57
txt
24
tagAlign
5
bed bed3+
1
hic
Organism
362
Homo sapiens
Biosample type
307
tissue
42
in vitro differentiated cells
10
cell line
4
primary cell
Organ
151
kidney
149
heart
8
embryo
6
blood vessel
6
epithelium
6
vasculature
5
connective tissue
4
liver
2
artery
2
pancreas
1
adipose tissue
Project
363
AMP
Genome assembly (visualization)
169
GRCh38
110
hg19
Lab
231
AMP-T2D consortium
128
Katalin Susztak, Upenn
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
2
inconsistent ontology term
lab.title!
Bing Ren, UCSD
BIOSAMPLE
ASSAY
363 results
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Clear Filters
single cell RNA-seq
ChIP-seq
ATAC-seq
total RNA-seq
snATAC-seq
Capture-C
Hi-C
RNA microarray
tissue
kidney
8
23
64
49
6
1
heart left ventricle
18
35
heart right ventricle
17
13
left cardiac atrium
18
right cardiac atrium
18
+ See 11 more…
in vitro differentiated cells
neural progenitor cell
21
10
7
adipocyte
1
1
osteoblast
1
1
cell line
H1-hESC
8
EndoC_BH1
2
primary cell
hepatocyte
4
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