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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
single cell RNA-seq
64
ATAC-seq
57
total RNA-seq
6
snATAC-seq
4
ChIP-seq
2
Capture-C
1
Hi-C
1
RNA microarray
Assay category
163
Transcription
70
DNA accessibility
4
DNA binding
1
3D chromatin structure
Target of assay
3
histone
3
histone modification
2
narrow histone mark
1
broad histone mark
1
control
Date released
689
February, 2021
406
November, 2017
343
August, 2017
341
May, 2020
306
October, 2019
267
May, 2021
241
August, 2021
218
June, 2019
200
May, 2022
189
February, 2023
168
July, 2018
120
May, 2019
108
July, 2019
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
59
September, 2020
56
March, 2020
56
November, 2019
51
December, 2017
49
April, 2018
47
September, 2023
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
8
December, 2019
7
August, 2020
5
March, 2023
4
January, 2018
4
October, 2022
3
August, 2018
3
June, 2018
3
March, 2019
1
August, 2022
Available data
106
tsv
67
bed narrowPeak
64
xls
57
txt
12
bam
11
bigWig
4
tagAlign
3
bed bed3+
1
hic
Organism
240
Homo sapiens
Biosample type
227
tissue
in vitro differentiated cells
10
cell line
4
primary cell
Organ
128
kidney
92
heart
8
embryo
6
blood vessel
6
epithelium
6
vasculature
4
liver
2
artery
2
pancreas
1
adipose tissue
1
connective tissue
Project
241
AMP
Genome assembly (visualization)
75
GRCh38
12
hg19
Lab
128
Katalin Susztak, Upenn
113
AMP-T2D consortium
Bing Ren, UCSD
Audit category:
2
inconsistent ontology term
lab.title!
Bing Ren, UCSD
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
241 results
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Clear Filters
single cell RNA-seq
ATAC-seq
total RNA-seq
snATAC-seq
ChIP-seq
Capture-C
Hi-C
RNA microarray
tissue
kidney
8
64
49
6
1
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
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cell line
H1-hESC
8
EndoC_BH1
2
primary cell
hepatocyte
4
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