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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
single cell RNA-seq
76
ATAC-seq
64
total RNA-seq
25
ChIP-seq
6
snATAC-seq
4
Capture-C
1
Hi-C
Assay category
170
Transcription
82
DNA accessibility
25
DNA binding
1
3D chromatin structure
Target of assay
17
histone
17
histone modification
9
narrow histone mark
8
broad histone mark
8
control
Date released
406
November, 2017
399
May, 2021
354
August, 2017
341
May, 2020
329
February, 2021
313
October, 2019
282
August, 2021
217
June, 2019
204
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
96
July, 2019
94
December, 2017
87
November, 2018
80
April, 2019
73
September, 2018
63
March, 2020
60
November, 2019
59
September, 2020
53
October, 2018
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
23
February, 2020
22
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
14
May, 2023
11
September, 2017
10
December, 2019
7
August, 2020
7
January, 2018
5
March, 2023
4
October, 2022
3
August, 2018
3
June, 2018
3
March, 2019
1
August, 2022
Available data
113
tsv
92
bed narrowPeak
64
xls
57
txt
49
bam
33
bigWig
24
tagAlign
5
bed bed3+
1
hic
Organism
282
Homo sapiens
Biosample type
226
tissue
42
in vitro differentiated cells
10
cell line
4
primary cell
Organ
128
kidney
92
heart
8
embryo
6
blood vessel
6
epithelium
6
vasculature
5
connective tissue
4
liver
2
artery
2
pancreas
adipose tissue
Project
282
AMP
Genome assembly (visualization)
105
GRCh38
45
hg19
Lab
150
AMP-T2D consortium
128
Katalin Susztak, Upenn
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
2
inconsistent ontology term
lab.title!
Bing Ren, UCSD
organ_slims!
adipose tissue
BIOSAMPLE
ASSAY
282 results
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Clear Filters
single cell RNA-seq
ATAC-seq
total RNA-seq
ChIP-seq
snATAC-seq
Capture-C
Hi-C
tissue
kidney
8
64
49
6
1
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 9 more…
in vitro differentiated cells
neural progenitor cell
10
7
21
adipocyte
1
1
osteoblast
1
1
cell line
H1-hESC
8
EndoC_BH1
2
primary cell
hepatocyte
4
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