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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ChIP-seq
237
total RNA-seq
198
ATAC-seq
183
single cell RNA-seq
56
snATAC-seq
47
WGBS
25
DNase-seq
15
pCHi-C
9
Hi-C
9
RRBS
1
DNAme array
1
FAIRE-seq
1
small RNA-seq
Assay category
421
Transcription
280
DNA accessibility
57
DNA methylation
9
3D chromatin structure
Target of assay
3
control
Date released
147
May, 2020
134
May, 2022
88
February, 2023
84
May, 2021
59
September, 2020
46
July, 2018
45
February, 2021
41
April, 2018
41
September, 2018
23
July, 2019
19
June, 2019
10
October, 2019
8
January, 2021
7
August, 2020
6
August, 2017
5
December, 2019
5
September, 2017
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
343
bam
343
bigWig
312
fastq
255
tsv
153
zippedFastqFolder
61
bed narrowPeak
46
bigBed narrowPeak
26
bed bed3+
22
bed broadPeak
22
bigBed broadPeak
9
bed bedMethyl
9
bigBed bedMethyl
6
hic
4
bedpe bed3+
3
cool
3
hdf5
2
csv
1
tar
Organism
782
Homo sapiens
Biosample type
1393
tissue
782
primary cell
166
in vitro differentiated cells
162
cell line
6
stem cell
Organ
314
epithelium
276
pancreas
connective tissue
21
kidney
14
vasculature
12
brain
11
blood vessel
10
liver
8
blood
8
bodily fluid
8
heart
5
vein
4
musculature of body
2
adipose tissue
2
artery
2
eye
1
bone element
1
bone marrow
1
pericardium
Project
338
AMP
324
HPAP
119
T1D
1
ITG
Genome assembly (visualization)
356
hg19
306
GRCh38
Lab
336
AMP-T2D consortium
324
Klaus Kaestner, Upenn
121
Kyle Gaulton, UCSD
1
ITG
Audit category:
31
audit script error
27
inconsistent ontology term
lab.title!
Bing Ren, UCSD
organ_slims!
connective tissue
assay_title!
ChIP-seq
BIOSAMPLE
ASSAY
782 results
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total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
Hi-C
RRBS
DNAme array
FAIRE-seq
small RNA-seq
primary cell
Langerhans cell
85
48
pancreatic alpha cell
52
35
12
31
1
pancreatic beta cell
21
23
12
16
1
monocyte
54
15
1
1
exocrine cell
39
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