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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
42
total RNA-seq
16
small RNA-seq
8
WGBS
6
ATAC-seq
4
Hi-C
3
single cell RNA-seq
2
FAIRE-seq
Assay category
61
Transcription
8
DNA accessibility
8
DNA methylation
4
3D chromatin structure
Target of assay
3
control
Date released
525
February, 2021
334
November, 2017
260
May, 2020
260
May, 2021
206
June, 2019
199
October, 2019
113
August, 2017
96
May, 2019
81
July, 2019
73
November, 2018
72
December, 2017
65
April, 2019
40
May, 2024
33
August, 2021
31
February, 2018
30
December, 2018
26
January, 2019
20
May, 2022
11
July, 2018
10
April, 2018
10
March, 2020
9
October, 2017
8
January, 2018
5
December, 2019
5
November, 2020
5
October, 2018
3
February, 2023
2
June, 2018
Available data
81
bigWig
78
bam
61
tsv
21
bed bedMethyl
21
bigBed bedMethyl
7
bed narrowPeak
4
bed bed3+
4
hdf5
2
bigBed narrowPeak
Organism
81
Homo sapiens
Biosample type
59
tissue
22
primary cell
Organ
21
heart
17
connective tissue
16
brain
12
adipose tissue
10
blood vessel
10
vasculature
8
liver
7
epithelium
7
kidney
5
musculature of body
pancreas
3
artery
1
limb
1
pericardium
Project
81
AMP
Genome assembly (visualization)
75
GRCh38
72
hg19
Lab
81
AMP-T2D consortium
lab.title!
Bing Ren, UCSD
organ_slims!
pancreas
BIOSAMPLE
ASSAY
81 results
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Clear Filters
total RNA-seq
small RNA-seq
WGBS
ATAC-seq
Hi-C
single cell RNA-seq
FAIRE-seq
tissue
heart left ventricle
2
2
2
omental fat pad
4
1
subcutaneous adipose tissue
4
1
heart
2
1
1
right lobe of liver
2
2
+ See 20 more…
primary cell
cerebellar granule cell
2
mesenchymal stem cell of adipose
1
1
skeletal muscle satellite cell
1
1
Purkinje cell
1
astrocyte of the cerebellum
1
+ See 14 more…
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