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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
199
DNase-seq
79
ChIP-seq
52
single cell RNA-seq
21
snATAC-seq
Assay category
220
DNA accessibility
79
DNA binding
52
Transcription
Target of assay
49
transcription factor
30
histone
30
histone modification
16
broad histone mark
14
narrow histone mark
9
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
183
June, 2019
64
November, 2017
54
May, 2022
19
September, 2020
15
August, 2017
8
October, 2019
7
November, 2018
1
November, 2020
Available data
2703
bam
2532
bigWig
1589
bed narrowPeak
1174
tsv
951
bigBed narrowPeak
887
fastq
379
tagAlign
301
bed broadPeak
278
bigBed broadPeak
244
bed bed3+
155
txt
73
zippedFastqFolder
64
xls
30
bed bedMethyl
30
bigBed bedMethyl
15
bedpe bed3+
15
hic
12
bed bed3
8
csv
7
bed bedgraph
4
hdf5
4
tar
2
ibed
1
tagAlign bed3+
Organism
351
Homo sapiens
Biosample type
170
tissue
122
primary cell
58
cell line
1
in vitro differentiated cells
Organ
102
epithelium
pancreas
78
kidney
63
liver
38
brain
36
limb
33
musculature of body
30
heart
18
ureter
17
vasculature
13
blood vessel
9
connective tissue
4
artery
4
eye
4
vein
2
adipose tissue
2
nerve
1
spleen
Project
278
AMP
73
HPAP
Genome assembly (visualization)
260
GRCh38
257
hg19
Lab
278
AMP-T2D consortium
73
Klaus Kaestner, Upenn
Audit category:
4
inconsistent ontology term
Audit category:
13
inconsistent control read length
1
inconsistent assembly
lab.title!
Bing Ren, UCSD
organ_slims!
pancreas
BIOSAMPLE
ASSAY
351 results
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Clear Filters
DNase-seq
ChIP-seq
single cell RNA-seq
snATAC-seq
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
+ See 37 more…
primary cell
Langerhans cell
52
21
skeletal muscle myoblast
1
13
endothelial cell of umbilical vein
2
2
astrocyte of the cerebellum
1
2
brain microvascular endothelial cell
1
2
+ See 19 more…
cell line
HepG2
58
in vitro differentiated cells
adipocyte
1
See all biosamples
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