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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
770
ChIP-seq
748
total RNA-seq
197
ATAC-seq
174
single cell RNA-seq
170
DNase-seq
87
RNA microarray
23
pCHi-C
21
WGBS
17
snATAC-seq
14
small RNA-seq
12
Hi-C
9
RRBS
3
snDrop-seq
2
FAIRE-seq
Assay category
936
Transcription
770
DNA binding
386
DNA accessibility
30
DNA methylation
12
3D chromatin structure
Target of assay
549
histone modification
548
histone
290
narrow histone mark
258
broad histone mark
150
control
71
transcription factor
20
RNA binding protein
2
chromatin remodeller
Date released
545
February, 2021
239
October, 2019
227
August, 2021
193
May, 2020
159
June, 2019
137
August, 2017
113
May, 2019
82
November, 2017
80
April, 2019
77
February, 2023
71
July, 2019
48
December, 2017
47
September, 2023
42
May, 2022
40
May, 2024
30
March, 2020
24
February, 2020
23
October, 2018
19
April, 2020
17
October, 2017
15
May, 2023
10
November, 2018
3
December, 2019
3
May, 2021
2
January, 2018
1
November, 2019
Available data
1454
bam
1383
bigWig
847
bed narrowPeak
800
tsv
486
bigBed narrowPeak
222
tagAlign
192
bed broadPeak
177
bed bed3+
169
bigBed broadPeak
151
txt
140
fastq
64
xls
17
bed bedMethyl
17
bigBed bedMethyl
8
hic
7
bedpe bed3+
6
csv
5
bed bed3
1
tagAlign bed3+
Organism
2245
Homo sapiens
Biosample type
2247
tissue
742
primary cell
536
cell line
391
in vitro differentiated cells
10
stem cell
Organ
547
connective tissue
pancreas
488
adipose tissue
361
liver
313
heart
299
kidney
265
brain
158
bone element
133
blood vessel
133
vasculature
122
limb
82
musculature of body
73
artery
56
eye
43
nerve
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2180
AMP
47
KPMP
19
LungMap
1
T1D
Genome assembly (visualization)
1457
GRCh38
1328
hg19
Lab
1958
AMP-T2D consortium
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
1
Kyle Gaulton, UCSD
Audit category:
91
inconsistent ontology term
27
inconsistent control
8
audit script error
Audit category:
16
missing controlled_by
Audit category:
1
inconsistent control read length
lab.title!
Bing Ren, UCSD
organ_slims!
pancreas
spleen
BIOSAMPLE
ASSAY
2247 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
pCHi-C
WGBS
snATAC-seq
small RNA-seq
Hi-C
RRBS
snDrop-seq
FAIRE-seq
tissue
adipose tissue
2
382
3
1
3
liver
145
167
20
1
2
1
3
1
1
1
kidney
27
49
75
64
13
6
1
1
1
bone element
84
heart left ventricle
35
3
2
18
3
1
4
1
1
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