Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
415
ChIP-seq
159
total RNA-seq
23
ATAC-seq
5
DNase-seq
3
small RNA-seq
2
Hi-C
2
RRBS
1
pCHi-C
Assay category
415
DNA binding
162
Transcription
28
DNA accessibility
2
3D chromatin structure
2
DNA methylation
Target of assay
318
transcription factor
80
histone modification
79
histone
78
recombinant protein
54
RNA binding protein
50
narrow histone mark
29
broad histone mark
23
chromatin remodeller
14
control
2
other context
2
other post-translational modification
Date released
266
November, 2017
170
May, 2020
50
December, 2017
49
November, 2018
20
August, 2017
20
May, 2022
9
July, 2019
7
October, 2019
5
December, 2019
5
January, 2019
3
August, 2021
2
February, 2021
2
June, 2019
2
March, 2020
Available data
603
bigWig
585
bam
423
bed narrowPeak
390
fastq
354
bigBed narrowPeak
162
tsv
63
bed broadPeak
63
bigBed broadPeak
42
tagAlign
13
bed bed3+
3
tar
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
bedpe bed3+
1
hdf5
1
hic
Organism
610
Homo sapiens
Biosample type
315
cell line
268
tissue
14
in vitro differentiated cells
13
primary cell
Organ
656
pancreas
610
liver
589
connective tissue
426
adipose tissue
311
epithelium
188
heart
165
vasculature
164
brain
159
blood vessel
129
kidney
96
limb
93
artery
73
musculature of body
70
bone element
55
blood
55
bodily fluid
34
eye
31
nerve
29
embryo
18
ureter
17
vein
14
spleen
12
skeleton
2
pericardium
1
pituitary gland
Project
610
AMP
Genome assembly (visualization)
610
hg19
531
GRCh38
Lab
590
AMP-T2D consortium
20
Karen Mohlke, UNC
Bing Ren, UCSD
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
12
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
lab.title!
Bing Ren, UCSD
BIOSAMPLE
ASSAY
610 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
small RNA-seq
Hi-C
RRBS
pCHi-C
cell line
HepG2
308
5
1
1
tissue
liver
83
147
20
2
1
1
1
right lobe of liver
7
2
1
1
2
in vitro differentiated cells
hepatocyte
14
primary cell
hepatocyte
3
5
1
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
Download