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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
single cell RNA-seq
66
ATAC-seq
49
total RNA-seq
6
snATAC-seq
4
Capture-C
1
ChIP-seq
1
Hi-C
1
RNA microarray
Assay category
155
Transcription
72
DNA accessibility
1
3D chromatin structure
1
DNA binding
Target of assay
1
broad histone mark
1
histone
1
histone modification
Date released
234
August, 2021
205
February, 2023
176
May, 2022
143
February, 2021
129
August, 2017
122
May, 2021
64
October, 2019
59
September, 2020
58
May, 2020
48
March, 2020
47
September, 2023
40
May, 2024
26
July, 2019
25
February, 2020
19
April, 2020
16
January, 2021
15
May, 2023
14
November, 2017
10
November, 2020
8
January, 2018
8
October, 2017
7
August, 2020
5
December, 2019
5
March, 2023
4
July, 2018
4
October, 2022
2
March, 2019
2
November, 2019
1
April, 2019
1
August, 2018
1
August, 2022
1
December, 2018
1
November, 2018
1
September, 2018
Available data
113
tsv
92
bed narrowPeak
64
xls
57
txt
bam
33
bigWig
24
tagAlign
5
bed bed3+
1
hic
Organism
233
Homo sapiens
Biosample type
227
tissue
5
in vitro differentiated cells
2
cell line
Organ
128
kidney
92
heart
6
blood vessel
6
vasculature
5
connective tissue
2
artery
2
epithelium
2
pancreas
1
adipose tissue
Project
234
AMP
Genome assembly (visualization)
64
GRCh38
5
hg19
Lab
128
Katalin Susztak, Upenn
102
AMP-T2D consortium
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
2
inconsistent ontology term
lab.title!
Bing Ren, UCSD
target.investigated_as!
chromatin remodeller
files.file_type!
bam
BIOSAMPLE
ASSAY
234 results
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single cell RNA-seq
ATAC-seq
total RNA-seq
snATAC-seq
Capture-C
ChIP-seq
Hi-C
RNA microarray
tissue
kidney
8
64
49
6
1
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
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in vitro differentiated cells
adipocyte
1
1
osteoblast
1
1
neural progenitor cell
1
cell line
EndoC_BH1
2
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