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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
57
ChIP-seq
Assay category
57
DNA binding
Target of assay
327
transcription factor
104
control
100
histone modification
99
histone
82
recombinant protein
58
narrow histone mark
57
RNA binding protein
41
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
34
November, 2017
19
November, 2018
4
December, 2017
Available data
57
bam
57
fastq
55
bed narrowPeak
55
bigBed narrowPeak
55
bigWig
4
bed broadPeak
4
bigBed broadPeak
1
tar
Organism
57
Homo sapiens
Biosample type
53
cell line
2
in vitro differentiated cells
2
tissue
Organ
57
liver
10
blood
10
bodily fluid
10
connective tissue
9
pancreas
8
epithelium
6
heart
5
adipose tissue
5
vasculature
4
blood vessel
3
brain
3
kidney
1
artery
1
eye
Project
57
AMP
Genome assembly (visualization)
54
hg19
51
GRCh38
Lab
57
AMP-T2D consortium
Bing Ren, UCSD
Audit category:
2
missing controlled_by
Audit category:
6
inconsistent control read length
3
inconsistent control run_type
lab.title!
Bing Ren, UCSD
BIOSAMPLE
ASSAY
57 results
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ChIP-seq
cell line
HepG2
53
in vitro differentiated cells
hepatocyte
2
tissue
liver
1
right lobe of liver
1
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