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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
76
ChIP-seq
3
MeRIP-seq
Assay category
76
DNA binding
Target of assay
350
transcription factor
89
recombinant protein
79
control
64
RNA binding protein
35
histone
35
histone modification
30
chromatin remodeller
18
broad histone mark
17
narrow histone mark
3
nucleotide modification
2
other context
2
other post-translational modification
Date released
56
November, 2017
9
October, 2019
3
February, 2021
3
January, 2019
3
November, 2018
3
November, 2020
2
November, 2019
Available data
76
bam
62
fastq
13
bigWig
4
tagAlign
Organism
79
Homo sapiens
Biosample type
187
tissue
79
cell line
37
in vitro differentiated cells
35
primary cell
1
stem cell
Organ
56
liver
11
pancreas
6
blood
6
bodily fluid
5
epithelium
3
kidney
2
artery
2
blood vessel
2
heart
2
vasculature
Project
79
AMP
Genome assembly (visualization)
13
hg19
Lab
76
AMP-T2D consortium
Bing Ren, UCSD
3
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
8
inconsistent ontology term
lab.title!
Bing Ren, UCSD
BIOSAMPLE
ASSAY
79 results
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ChIP-seq
MeRIP-seq
cell line
HepG2
56
GM12878
6
Panc1
6
EndoC_BH1
2
3
smooth muscle cell of the coronary artery
2
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