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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
218
ChIP-seq
17
total RNA-seq
ATAC-seq
4
small RNA-seq
3
Hi-C
3
single cell RNA-seq
2
DNase-seq
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
218
DNA binding
24
Transcription
3
3D chromatin structure
3
DNA accessibility
2
DNA methylation
Target of assay
187
histone
187
histone modification
117
narrow histone mark
70
broad histone mark
31
control
3
RNA binding protein
3
transcription factor
Date released
91
November, 2017
85
October, 2019
June, 2019
28
May, 2019
17
July, 2019
15
October, 2017
12
February, 2020
2
March, 2020
2
November, 2018
Available data
211
bam
190
bigWig
173
bed narrowPeak
118
tagAlign
97
bigBed narrowPeak
26
tsv
20
fastq
17
bed broadPeak
8
bigBed broadPeak
5
bed bed3+
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
tagAlign bed3+
Organism
252
Homo sapiens
Biosample type
236
tissue
16
primary cell
Organ
790
pancreas
746
liver
641
connective tissue
484
adipose tissue
401
epithelium
311
heart
252
brain
198
kidney
183
vasculature
179
blood vessel
147
bone element
94
artery
82
limb
68
blood
68
bodily fluid
52
musculature of body
42
nerve
37
embryo
26
eye
24
spleen
22
vein
20
lung
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
252
AMP
Genome assembly (visualization)
185
GRCh38
143
hg19
Lab
252
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
4
missing controlled_by
lab.title!
Karen Mohlke, UNC
assay_title!
ATAC-seq
month_released!
June, 2019
BIOSAMPLE
ASSAY
252 results
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ChIP-seq
total RNA-seq
small RNA-seq
Hi-C
single cell RNA-seq
DNase-seq
RRBS
pCHi-C
FAIRE-seq
tissue
brain
20
1
2
1
layer of hippocampus
23
substantia nigra
16
1
temporal lobe
15
1
1
caudate nucleus
15
1
+ See 70 more…
primary cell
astrocyte of the cerebellum
3
1
brain microvascular endothelial cell
3
1
choroid plexus epithelial cell
3
1
cerebellar granule cell
2
Purkinje cell
1
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