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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
105
total RNA-seq
88
ChIP-seq
17
pCHi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
105
Transcription
88
DNA binding
DNA accessibility
Target of assay
88
histone
88
histone modification
44
broad histone mark
44
narrow histone mark
Date released
153
May, 2021
45
May, 2020
10
February, 2023
7
March, 2020
Available data
186
bam
186
bigWig
98
tsv
88
bed narrowPeak
84
tagAlign
Organism
215
Homo sapiens
Biosample type
196
primary cell
10
tissue
9
cell line
Organ
13
pancreas
4
epithelium
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
3576
AMP
227
HPAP
215
T1D
47
KPMP
9
LungMap
4
community
1
ITG
Genome assembly (visualization)
186
GRCh38
186
hg19
Lab
207
Kyle Gaulton, UCSD
8
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
lab.title!
Karen Mohlke, UNC
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
215 results
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total RNA-seq
ChIP-seq
pCHi-C
CRISPR genome editing followed by DNA sequencing
HiChIP
primary cell
monocyte
53
84
1
B cell
2
1
CD8-positive, alpha-beta T cell
2
1
naive B cel
2
1
naive thymus-derived CD8-positive, alpha-beta T cell
2
1
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tissue
islet of Langerhans
7
2
thymus
1
cell line
EndoC_BH1
2
2
3
2
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