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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
556
ChIP-seq
254
total RNA-seq
100
single cell RNA-seq
59
ATAC-seq
29
DNase-seq
2
Hi-C
2
small RNA-seq
1
WGBS
Assay category
556
DNA binding
356
Transcription
88
DNA accessibility
2
3D chromatin structure
1
DNA methylation
Target of assay
318
transcription factor
232
histone
232
histone modification
119
narrow histone mark
113
broad histone mark
88
recombinant protein
67
RNA binding protein
29
chromatin remodeller
4
control
2
other context
2
other post-translational modification
Date released
223
November, 2017
154
May, 2021
94
February, 2021
72
September, 2018
57
November, 2018
48
July, 2018
47
June, 2019
45
May, 2020
43
April, 2018
42
August, 2017
42
October, 2019
27
December, 2018
20
January, 2019
18
July, 2019
13
November, 2019
11
August, 2021
7
August, 2020
6
November, 2020
5
December, 2019
5
March, 2020
5
September, 2017
4
May, 2019
3
August, 2018
3
December, 2017
3
June, 2018
3
September, 2020
2
October, 2018
1
March, 2023
Available data
991
bam
975
bigWig
621
bed narrowPeak
553
fastq
428
bigBed narrowPeak
356
tsv
112
tagAlign
90
bed broadPeak
90
bigBed broadPeak
35
bed bed3+
2
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
hic
Organism
1003
Homo sapiens
Biosample type
tissue
536
primary cell
464
cell line
in vitro differentiated cells
3
stem cell
Organ
279
liver
274
epithelium
247
pancreas
86
vasculature
82
blood vessel
74
heart
66
artery
54
blood
54
bodily fluid
40
kidney
32
connective tissue
14
brain
12
vein
11
musculature of body
8
embryo
3
eye
2
adipose tissue
1
pericardium
Project
808
AMP
184
T1D
10
HPAP
1
ITG
Genome assembly (visualization)
1161
hg19
1003
GRCh38
1
hg18
Lab
812
AMP-T2D consortium
180
Kyle Gaulton, UCSD
10
Klaus Kaestner, Upenn
1
ITG
Audit category:
93
inconsistent ontology term
1
inconsistent control
1
inconsistent replicate
Audit category:
49
missing controlled_by
Audit category:
29
inconsistent control read length
7
inconsistent control run_type
3
inconsistent assembly
lab.title!
Karen Mohlke, UNC
biosample_type!
in vitro differentiated cells
tissue
BIOSAMPLE
ASSAY
1003 results
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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
DNase-seq
Hi-C
small RNA-seq
WGBS
primary cell
monocyte
84
53
13
pancreatic alpha cell
7
10
12
13
pancreatic beta cell
7
10
12
10
pancreatic ductal cell
13
4
10
4
pancreatic acinar cell
8
4
12
5
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cell line
HepG2
261
5
1
1
smooth muscle cell of the coronary artery
4
52
8
GM12878
54
EndoC_BH1
13
33
1
H1-hESC
8
+ See 7 more…
stem cell
hESC
3
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