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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
218
ChIP-seq
26
total RNA-seq
16
ATAC-seq
6
DNase-seq
4
pCHi-C
2
Hi-C
Assay category
218
DNA binding
26
Transcription
22
DNA accessibility
2
3D chromatin structure
Target of assay
175
histone
175
histone modification
132
narrow histone mark
43
broad histone mark
36
control
7
recombinant protein
7
transcription factor
Date released
641
February, 2021
397
November, 2017
284
August, 2017
273
August, 2021
272
October, 2019
194
May, 2020
163
June, 2019
120
July, 2018
115
May, 2019
101
February, 2023
87
November, 2018
80
April, 2019
77
July, 2019
74
October, 2018
61
May, 2021
56
November, 2019
55
March, 2020
51
December, 2017
47
September, 2023
40
May, 2024
35
December, 2018
30
January, 2019
26
May, 2022
25
February, 2020
23
October, 2017
19
April, 2020
15
May, 2023
10
November, 2020
8
January, 2021
6
April, 2018
6
September, 2017
5
March, 2019
4
January, 2018
4
March, 2023
3
December, 2019
1
August, 2022
1
October, 2022
Available data
215
bam
180
bigWig
166
bed narrowPeak
55
bigBed narrowPeak
49
tagAlign
12
tsv
6
bed bed3+
5
bed broadPeak
5
bigBed broadPeak
1
bedpe bed3+
1
hdf5
1
hic
1
tagAlign bed3+
Organism
272
Homo sapiens
Biosample type
242
tissue
primary cell
30
cell line
in vitro differentiated cells
Organ
86
brain
69
limb
42
nerve
26
artery
26
blood vessel
26
vasculature
21
eye
19
kidney
18
pancreas
8
heart
6
liver
4
gonad
4
ovary
2
connective tissue
2
epithelium
2
pituitary gland
1
adipose tissue
1
lymph node
1
skin of body
Project
272
AMP
Genome assembly (visualization)
183
hg19
181
GRCh38
Lab
272
AMP-T2D consortium
Audit category:
15
inconsistent ontology term
Audit category:
1
inconsistent assembly
lab.title!
Karen Mohlke, UNC
biosample_type!
in vitro differentiated cells
primary cell
BIOSAMPLE
ASSAY
272 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
pCHi-C
Hi-C
tissue
islet of Langerhans
21
14
13
4
tibial nerve
35
4
1
2
tibial artery
23
1
2
heart
5
2
1
brain
5
1
+ See 78 more…
cell line
Panc1
13
1
1
RCC 7860 HIF1a re-expression
4
1
RCC 7860 HIF2a over-expression
3
1
RCC 7860 vector
3
1
glomerular visceral epithelial cell
1
1
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