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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
19
Hi-C
3
ChIP-seq
1
FAIRE-seq
Assay category
19
3D chromatin structure
3
DNA binding
1
DNA accessibility
Target of assay
3
transcription factor
1
RNA binding protein
Date released
8
March, 2020
3
November, 2017
3
October, 2019
3
October, 2022
2
August, 2021
2
November, 2019
1
March, 2019
1
March, 2023
Available data
3101
bam
2890
bigWig
1665
bed narrowPeak
1469
tsv
1217
fastq
1025
bigBed narrowPeak
358
tagAlign
321
bed broadPeak
284
bigBed broadPeak
248
bed bed3+
158
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
19
hic
16
bedpe bed3+
8
csv
7
bed bed3
5
hdf5
4
tar
3
cool
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
23
Homo sapiens
Biosample type
11
tissue
7
primary cell
5
cell line
in vitro differentiated cells
Organ
7
epithelium
7
pancreas
5
liver
4
blood vessel
4
vasculature
3
heart
3
vein
2
musculature of body
1
kidney
Project
19
AMP
3
HPAP
1
ITG
Genome assembly (visualization)
22
hg19
1
GRCh38
Lab
16
AMP-T2D consortium
3
Klaus Kaestner, Upenn
2
Bing Ren, UCSD
1
ITG
1
Katalin Susztak, Upenn
Audit category:
4
audit script error
1
inconsistent ontology term
lab.title!
Karen Mohlke, UNC
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
23 results
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Hi-C
ChIP-seq
FAIRE-seq
tissue
islet of Langerhans
2
psoas muscle
2
aorta
1
heart
1
heart left ventricle
1
+ See 4 more…
primary cell
endothelial cell of umbilical vein
2
1
chondrocytes
1
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
cell line
HepG2
1
3
EndoC_BH1
1
See all biosamples
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