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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
964
ChIP-seq
496
total RNA-seq
271
ATAC-seq
189
single cell RNA-seq
56
snATAC-seq
48
WGBS
34
DNase-seq
32
pCHi-C
18
Hi-C
10
RRBS
6
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
2
small RNA-seq
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
FAIRE-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
48
DNA methylation
1
DNA accessibility
Date released
41
May, 2022
6
February, 2021
1
November, 2018
1
October, 2019
Available data
41
zippedFastqFolder
7
fastq
6
tsv
2
bam
2
bigWig
1
bed bedMethyl
1
bed narrowPeak
1
bigBed bedMethyl
1
bigBed narrowPeak
1
tar
Organism
49
Homo sapiens
Biosample type
48
primary cell
tissue
1
cell line
Organ
48
epithelium
47
pancreas
1
blood vessel
1
liver
1
vasculature
1
vein
Project
47
HPAP
2
AMP
Genome assembly (visualization)
1
GRCh38
1
hg19
Lab
47
Klaus Kaestner, Upenn
2
AMP-T2D consortium
lab.title!
Karen Mohlke, UNC
biosample_type!
tissue
BIOSAMPLE
ASSAY
49 results
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Clear Filters
WGBS
FAIRE-seq
primary cell
pancreatic alpha cell
31
pancreatic beta cell
16
endothelial cell of umbilical vein
1
cell line
HepG2
1
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