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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
145
ChIP-seq
57
total RNA-seq
16
pCHi-C
15
ATAC-seq
4
DNase-seq
1
DNAme array
1
FAIRE-seq
1
Hi-C
Assay category
145
DNA binding
57
Transcription
20
DNA accessibility
1
3D chromatin structure
1
DNA methylation
Target of assay
139
histone
139
histone modification
78
broad histone mark
61
narrow histone mark
6
control
Date released
206
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
73
September, 2018
59
August, 2017
59
September, 2020
55
June, 2019
48
February, 2021
48
July, 2018
43
April, 2018
34
October, 2019
31
July, 2019
9
November, 2017
8
January, 2021
7
August, 2020
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
194
bigWig
180
bam
148
bed narrowPeak
84
tagAlign
54
tsv
13
bigBed narrowPeak
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
1
hic
1
tar
Organism
240
Homo sapiens
Biosample type
282
tissue
240
primary cell
140
in vitro differentiated cells
51
cell line
Organ
33
epithelium
21
blood vessel
21
vasculature
21
vein
11
kidney
1
bone element
1
bone marrow
1
connective tissue
1
liver
Project
151
T1D
89
AMP
Genome assembly (visualization)
210
hg19
171
GRCh38
Lab
186
Kyle Gaulton, UCSD
54
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
1
audit script error
lab.title!
Karen Mohlke, UNC
BIOSAMPLE
ASSAY
240 results
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ChIP-seq
total RNA-seq
pCHi-C
ATAC-seq
DNase-seq
DNAme array
FAIRE-seq
Hi-C
primary cell
monocyte
85
52
1
13
1
CD8-positive, alpha-beta T cell
33
2
1
endothelial cell of umbilical vein
17
2
1
1
epithelial cell of proximal tubule
7
naive thymus-derived CD4-positive, alpha-beta T cell
2
1
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