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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
134
ChIP-seq
ATAC-seq
30
DNase-seq
8
WGBS
3
Hi-C
3
pCHi-C
2
RRBS
Assay category
Transcription
134
DNA binding
30
DNA accessibility
10
DNA methylation
3
3D chromatin structure
Target of assay
97
histone
97
histone modification
57
broad histone mark
40
narrow histone mark
20
control
17
transcription factor
11
RNA binding protein
Date released
57
April, 2019
40
May, 2024
35
June, 2019
21
May, 2019
10
July, 2019
6
February, 2021
6
October, 2019
5
March, 2020
Available data
150
bigWig
144
bed narrowPeak
129
bam
94
bigBed narrowPeak
30
bed bed3+
30
bed broadPeak
30
bigBed broadPeak
8
bed bedMethyl
8
bigBed bedMethyl
6
tagAlign
3
bedpe bed3+
3
hic
3
tsv
Organism
180
Homo sapiens
Biosample type
165
tissue
9
primary cell
6
cell line
Organ
575
liver
315
pancreas
258
brain
220
epithelium
180
heart
178
connective tissue
154
kidney
123
vasculature
117
blood vessel
107
limb
86
musculature of body
85
bone element
84
adipose tissue
68
blood
68
bodily fluid
38
artery
37
nerve
24
spleen
23
embryo
22
vein
18
ureter
14
eye
11
lung
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
small intestine
1
stomach
1
urinary bladder
Project
180
AMP
Genome assembly (visualization)
149
GRCh38
106
hg19
Lab
140
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
Audit category:
6
inconsistent ontology term
lab.title!
Karen Mohlke, UNC
assay_slims!
Transcription
assay_title!
ATAC-seq
BIOSAMPLE
ASSAY
180 results
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ChIP-seq
DNase-seq
WGBS
Hi-C
pCHi-C
RRBS
tissue
heart left ventricle
35
3
4
1
1
1
left cardiac atrium
40
1
heart
14
18
1
1
heart right ventricle
13
1
2
1
1
right atrium auricular region
10
2
+ See 2 more…
primary cell
cardiac fibroblast
5
3
1
cell line
smooth muscle cell of the coronary artery
6
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