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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
284
ChIP-seq
68
DNase-seq
24
total RNA-seq
7
Hi-C
6
ATAC-seq
4
small RNA-seq
3
single cell RNA-seq
2
RRBS
2
pCHi-C
1
FAIRE-seq
1
WGBS
Assay category
284
DNA binding
75
DNA accessibility
31
Transcription
7
3D chromatin structure
3
DNA methylation
Target of assay
236
histone
236
histone modification
132
narrow histone mark
104
broad histone mark
48
control
3
RNA binding protein
3
transcription factor
Date released
155
October, 2019
91
November, 2017
62
June, 2019
35
May, 2019
23
July, 2019
16
October, 2017
15
February, 2020
February, 2021
2
March, 2020
2
November, 2018
1
February, 2023
Available data
351
bam
313
bigWig
289
bed narrowPeak
211
bigBed narrowPeak
118
tagAlign
83
bed broadPeak
74
bigBed broadPeak
71
bed bed3+
33
tsv
21
fastq
3
bed bedMethyl
3
bigBed bedMethyl
3
hdf5
1
bed bed3
1
tagAlign bed3+
Organism
402
Homo sapiens
Biosample type
381
tissue
21
primary cell
Organ
914
pancreas
748
liver
492
epithelium
346
kidney
327
heart
286
brain
229
connective tissue
170
vasculature
164
blood vessel
116
limb
105
adipose tissue
96
musculature of body
75
artery
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
9
bone element
8
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
402
AMP
Genome assembly (visualization)
307
GRCh38
254
hg19
Lab
402
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
Audit category:
4
missing controlled_by
lab.title!
Karen Mohlke, UNC
month_released!
February, 2021
BIOSAMPLE
ASSAY
402 results
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ChIP-seq
DNase-seq
total RNA-seq
Hi-C
ATAC-seq
small RNA-seq
single cell RNA-seq
RRBS
pCHi-C
FAIRE-seq
WGBS
tissue
tibial nerve
35
2
5
1
brain
20
14
1
1
1
tibial artery
23
2
1
1
layer of hippocampus
23
muscle of leg
7
13
1
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primary cell
astrocyte of the cerebellum
3
1
1
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
1
brain pericyte
1
1
cerebellar granule cell
2
+ See 2 more…
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