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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
69
total RNA-seq
66
ChIP-seq
14
ATAC-seq
4
Hi-C
1
WGBS
1
pCHi-C
Assay category
69
Transcription
66
DNA binding
14
DNA accessibility
4
3D chromatin structure
1
DNA methylation
Target of assay
49
histone
49
histone modification
34
broad histone mark
17
control
15
narrow histone mark
Date released
150
February, 2021
65
October, 2019
8
February, 2023
7
May, 2019
5
July, 2019
3
February, 2020
1
May, 2021
Available data
174
bam
149
bigWig
94
bed narrowPeak
88
txt
84
bigBed narrowPeak
65
tsv
36
bed bed3+
bed broadPeak
36
bigBed broadPeak
4
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
Organism
239
Homo sapiens
Biosample type
238
tissue
1
primary cell
Organ
925
pancreas
688
liver
674
connective tissue
502
epithelium
488
adipose tissue
363
heart
276
kidney
239
brain
219
vasculature
217
blood vessel
159
bone element
137
artery
86
limb
69
blood
69
bodily fluid
57
eye
50
musculature of body
41
nerve
37
embryo
24
spleen
20
lung
18
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
238
AMP
1
T1D
Genome assembly (visualization)
124
hg19
120
GRCh38
Lab
238
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
84
inconsistent ontology term
lab.title!
Karen Mohlke, UNC
files.file_type!
bed broadPeak
BIOSAMPLE
ASSAY
239 results
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RNA microarray
total RNA-seq
ChIP-seq
ATAC-seq
Hi-C
WGBS
pCHi-C
tissue
bone element
84
bone tissue
58
tibial nerve
5
35
1
tibial artery
1
23
1
muscle of leg
7
1
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primary cell
megakaryocyte
1
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