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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
66
ChIP-seq
65
total RNA-seq
36
DNase-seq
10
ATAC-seq
4
Hi-C
1
WGBS
1
pCHi-C
Assay category
66
DNA binding
65
Transcription
46
DNA accessibility
4
3D chromatin structure
1
DNA methylation
Target of assay
49
histone
49
histone modification
34
broad histone mark
17
control
15
narrow histone mark
Date released
150
February, 2021
69
October, 2019
32
June, 2019
February, 2023
7
May, 2019
5
July, 2019
3
February, 2020
1
May, 2021
Available data
174
bam
149
bigWig
94
bed narrowPeak
84
bigBed narrowPeak
84
txt
65
tsv
36
bed bed3+
36
bed broadPeak
36
bigBed broadPeak
1
bed bedMethyl
1
bigBed bedMethyl
Organism
267
Homo sapiens
Biosample type
266
tissue
1
primary cell
Organ
890
pancreas
751
liver
670
connective tissue
490
adipose tissue
472
epithelium
357
heart
354
kidney
285
brain
201
vasculature
195
blood vessel
151
bone element
122
limb
106
artery
96
musculature of body
69
blood
69
bodily fluid
43
nerve
37
embryo
30
eye
25
spleen
22
vein
20
lung
18
ureter
8
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
266
AMP
1
T1D
Genome assembly (visualization)
156
GRCh38
156
hg19
Lab
266
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
85
inconsistent ontology term
lab.title!
Karen Mohlke, UNC
month_released!
February, 2023
BIOSAMPLE
ASSAY
267 results
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RNA microarray
ChIP-seq
total RNA-seq
DNase-seq
ATAC-seq
Hi-C
WGBS
pCHi-C
tissue
bone element
84
bone tissue
58
tibial nerve
35
5
2
1
tibial artery
23
1
2
1
muscle of leg
7
13
1
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primary cell
megakaryocyte
1
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