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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
86
ChIP-seq
84
RNA microarray
69
total RNA-seq
37
DNase-seq
15
ATAC-seq
4
Hi-C
3
WGBS
2
pCHi-C
Assay category
86
DNA binding
69
Transcription
52
DNA accessibility
4
3D chromatin structure
3
DNA methylation
Target of assay
55
histone
55
histone modification
38
broad histone mark
25
control
17
narrow histone mark
6
transcription factor
3
other context
3
other post-translational modification
Date released
150
February, 2021
69
October, 2019
32
June, 2019
9
November, 2018
8
February, 2023
7
December, 2018
7
January, 2019
7
May, 2019
5
July, 2019
3
February, 2020
1
March, 2020
1
May, 2021
1
October, 2017
Available data
198
bam
165
bigWig
108
bed narrowPeak
97
bigBed narrowPeak
88
txt
66
tsv
37
bed bed3+
37
bed broadPeak
37
bigBed broadPeak
24
fastq
4
bed bed3
3
bed bedMethyl
3
bigBed bedMethyl
Organism
300
Homo sapiens
Biosample type
299
tissue
1
primary cell
Organ
946
pancreas
751
liver
684
connective tissue
524
epithelium
491
adipose tissue
393
heart
354
kidney
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
299
AMP
1
T1D
Genome assembly (visualization)
174
hg19
172
GRCh38
Lab
299
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
85
inconsistent ontology term
lab.title!
Karen Mohlke, UNC
BIOSAMPLE
ASSAY
300 results
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ChIP-seq
RNA microarray
total RNA-seq
DNase-seq
ATAC-seq
Hi-C
WGBS
pCHi-C
tissue
bone element
84
bone tissue
58
tibial nerve
35
5
2
1
tibial artery
23
1
2
1
spleen
20
1
1
2
1
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primary cell
megakaryocyte
1
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